C9H11orf86 (chromosome 9 C11orf86 homolog) - Rat Genome Database

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Gene: C9H11orf86 (chromosome 9 C11orf86 homolog) Pan paniscus
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Symbol: C9H11orf86 (Ensembl: C11orf86)
Name: chromosome 9 C11orf86 homolog (Ensembl:chromosome 11 open reading frame 86)
RGD ID: 11718808
Description: ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); genetic disease (ortholog); intellectual disability (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: C11H11orf86; chromosome 11 C11orf86 homolog; chromosome 11 open reading frame, human C11orf86; uncharacterized protein C11orf86 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2968,202,752 - 68,204,602 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11169,245,489 - 69,247,339 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01162,334,288 - 62,336,145 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11165,655,645 - 65,657,497 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1165,655,645 - 65,657,492 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
C9H11orf86
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2968,202,752 - 68,204,602 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11169,245,489 - 69,247,339 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01162,334,288 - 62,336,145 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11165,655,645 - 65,657,497 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1165,655,645 - 65,657,492 (+)Ensemblpanpan1.1panPan2
C11orf86
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381166,975,304 - 66,977,009 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1166,975,277 - 66,977,009 (+)EnsemblGRCh38hg38GRCh38
GRCh371166,742,775 - 66,744,480 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361166,499,330 - 66,501,055 (+)NCBINCBI36Build 36hg18NCBI36
Celera1164,071,255 - 64,072,980 (+)NCBICelera
Cytogenetic Map11q13.2NCBI
HuRef1163,070,402 - 63,072,127 (+)NCBIHuRef
CHM1_11166,625,762 - 66,627,487 (+)NCBICHM1_1
T2T-CHM13v2.01166,969,804 - 66,971,509 (+)NCBIT2T-CHM13v2.0
2010003K11Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39194,546,816 - 4,548,611 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl194,546,816 - 4,548,611 (-)EnsemblGRCm39 Ensembl
GRCm38194,496,788 - 4,498,583 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl194,496,788 - 4,498,583 (-)EnsemblGRCm38mm10GRCm38
MGSCv37194,496,788 - 4,498,583 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36194,496,788 - 4,498,583 (-)NCBIMGSCv36mm8
Celera194,367,184 - 4,368,979 (-)NCBICelera
Cytogenetic Map19ANCBI
cM Map194.07NCBI
C1h11orf86
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81211,213,429 - 211,225,624 (-)NCBIGRCr8
mRatBN7.21201,784,009 - 201,785,916 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1201,784,009 - 201,785,916 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1210,136,604 - 210,138,514 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01217,229,428 - 217,231,335 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01209,920,452 - 209,922,359 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01219,743,744 - 219,758,867 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1219,743,747 - 219,745,654 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01226,611,402 - 226,623,462 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41207,097,417 - 207,099,324 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1199,327,747 - 199,329,654 (-)NCBICelera
Cytogenetic Map1q43NCBI
LOC102027539
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542218,407,636 - 18,421,606 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542218,407,695 - 18,415,495 (-)NCBIChiLan1.0ChiLan1.0
C18H11orf86
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11850,394,024 - 50,395,968 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1850,394,805 - 50,395,812 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1849,003,950 - 49,005,876 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01851,344,577 - 51,346,503 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1851,345,315 - 51,347,268 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11850,528,730 - 50,530,654 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01850,108,494 - 50,110,415 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01850,898,158 - 50,900,087 (-)NCBIUU_Cfam_GSD_1.0
CUNH11orf86
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049476,221,946 - 6,223,503 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365992,664,951 - 2,665,843 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365992,664,951 - 2,665,843 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C2H11orf86
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl25,467,059 - 5,469,209 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.125,466,633 - 5,469,128 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.224,350,742 - 4,352,263 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CUNH11orf86
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.117,286,315 - 7,288,261 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl17,287,073 - 7,287,964 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038104,578,938 - 104,580,836 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH11orf86
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476719,468,475 - 19,469,512 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476719,467,734 - 19,481,860 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSPPAT00000065966   ⟹   ENSPPAP00000043033
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1165,655,645 - 65,657,492 (+)Ensembl
RefSeq Acc Id: XM_008954144   ⟹   XP_008952392
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2968,202,752 - 68,204,602 (+)NCBI
NHGRI_mPanPan11169,245,489 - 69,247,339 (+)NCBI
Mhudiblu_PPA_v01162,334,288 - 62,336,145 (+)NCBI
PanPan1.11165,655,645 - 65,657,497 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008952392 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000043033.1
RefSeq Acc Id: XP_008952392   ⟸   XM_008954144
- Sequence:
RefSeq Acc Id: ENSPPAP00000043033   ⟸   ENSPPAT00000065966


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000044055 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000065966.1 UniProtKB/TrEMBL
InterPro DUF4633 UniProtKB/TrEMBL
NCBI Gene C11H11orf86 ENTREZGENE
PANTHER HYPOTHETICAL PROTEIN LOC689065 UniProtKB/TrEMBL
  PTHR31831 UniProtKB/TrEMBL
Pfam DUF4633 UniProtKB/TrEMBL
UniProt A0A2R9CP02_PANPA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-03-13 C9H11orf86  chromosome 9 C11orf86 homolog  C11H11orf86  chromosome 11 C11orf86 homolog  Symbol and/or name change 5135510 APPROVED
2018-05-08 C11H11orf86  chromosome 11 C11orf86 homolog    chromosome 11 open reading frame, human C11orf86  Symbol and/or name change 5135510 APPROVED