SCAMP5 (secretory carrier membrane protein 5) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: SCAMP5 (secretory carrier membrane protein 5) Pan paniscus
Analyze
Symbol: SCAMP5
Name: secretory carrier membrane protein 5
RGD ID: 11718348
Description: ENCODES a protein that exhibits protein-containing complex binding (inferred); INVOLVED IN regulation of synaptic vesicle endocytosis (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal recessive intellectual developmental disorder 41 (ortholog); Bloom syndrome (ortholog); FOUND IN synaptic vesicle (ortholog); synaptic vesicle membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: secretory carrier-associated membrane protein 5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21664,220,966 - 64,246,820 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11568,384,672 - 68,410,550 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01553,935,756 - 53,961,611 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11573,552,145 - 73,577,524 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1573,565,906 - 73,577,524 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SCAMP5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21664,220,966 - 64,246,820 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11568,384,672 - 68,410,550 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01553,935,756 - 53,961,611 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11573,552,145 - 73,577,524 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1573,565,906 - 73,577,524 (+)Ensemblpanpan1.1panPan2
SCAMP5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381574,995,563 - 75,021,495 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1574,957,219 - 75,021,495 (+)EnsemblGRCh38hg38GRCh38
GRCh371575,287,904 - 75,313,836 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361573,074,954 - 73,100,889 (+)NCBINCBI36Build 36hg18NCBI36
Build 341573,074,953 - 73,100,889NCBI
Celera1552,238,808 - 52,264,809 (+)NCBICelera
Cytogenetic Map15q24.2NCBI
HuRef1552,084,689 - 52,110,665 (+)NCBIHuRef
CHM1_11575,405,953 - 75,431,907 (+)NCBICHM1_1
T2T-CHM13v2.01572,865,550 - 72,891,483 (+)NCBIT2T-CHM13v2.0
Scamp5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39957,348,610 - 57,375,343 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl957,348,610 - 57,375,343 (-)EnsemblGRCm39 Ensembl
GRCm38957,441,327 - 57,468,060 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl957,441,327 - 57,468,060 (-)EnsemblGRCm38mm10GRCm38
MGSCv37957,289,134 - 57,315,831 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36957,239,464 - 57,266,161 (-)NCBIMGSCv36mm8
Celera954,676,864 - 54,703,651 (-)NCBICelera
Cytogenetic Map9BNCBI
cM Map931.05NCBI
Scamp5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8866,739,794 - 66,778,538 (-)NCBIGRCr8
mRatBN7.2857,845,831 - 57,884,516 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl857,846,659 - 57,872,027 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx863,377,344 - 63,402,994 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0861,656,091 - 61,681,746 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0859,520,635 - 59,546,283 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0862,221,820 - 62,266,269 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl862,220,892 - 62,248,017 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0861,999,367 - 62,025,536 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.1861,205,644 - 61,231,496 (-)NCBI
Celera857,312,606 - 57,337,966 (-)NCBICelera
Cytogenetic Map8q24NCBI
Scamp5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554502,986,468 - 3,009,774 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554502,986,522 - 3,009,655 (-)NCBIChiLan1.0ChiLan1.0
SCAMP5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13038,007,967 - 38,029,541 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3038,008,035 - 38,030,881 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3037,931,626 - 37,960,517 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03038,204,742 - 38,233,398 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3038,212,119 - 38,233,409 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13038,157,659 - 38,186,793 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03038,203,767 - 38,232,479 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03038,439,373 - 38,468,565 (+)NCBIUU_Cfam_GSD_1.0
Scamp5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640116,055,923 - 116,135,129 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647133,959,208 - 33,984,578 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0 EnsemblNW_00493647133,936,531 - 33,958,573 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647133,936,721 - 33,958,439 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SCAMP5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl758,550,198 - 58,559,310 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1758,550,190 - 58,577,894 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2763,239,400 - 63,266,799 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SCAMP5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1268,452,276 - 8,517,949 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666048133,189,939 - 133,217,255 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Scamp5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624894152,064 - 170,637 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000063171   ⟹   ENSPPAP00000040256
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1573,565,906 - 73,577,524 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000063179   ⟹   ENSPPAP00000040264
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1573,567,910 - 73,574,981 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000063182   ⟹   ENSPPAP00000040267
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1573,568,670 - 73,574,981 (+)Ensembl
RefSeq Acc Id: XM_003811081   ⟹   XP_003811129
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21664,220,966 - 64,246,820 (+)NCBI
NHGRI_mPanPan11568,384,672 - 68,410,550 (+)NCBI
Mhudiblu_PPA_v01553,935,756 - 53,961,611 (+)NCBI
PanPan1.11573,552,145 - 73,577,524 (+)NCBI
Sequence:
RefSeq Acc Id: XM_057299934   ⟹   XP_057155917
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21664,222,745 - 64,246,820 (+)NCBI
NHGRI_mPanPan11568,386,451 - 68,410,550 (+)NCBI
RefSeq Acc Id: XM_057299935   ⟹   XP_057155918
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21664,221,009 - 64,246,820 (+)NCBI
NHGRI_mPanPan11568,384,734 - 68,410,550 (+)NCBI
Protein Sequences
Protein RefSeqs XP_003811129 (Get FASTA)   NCBI Sequence Viewer  
  XP_057155917 (Get FASTA)   NCBI Sequence Viewer  
  XP_057155918 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000040256.1
  ENSPPAP00000040264.1
  ENSPPAP00000040267.1
Reference Protein Sequences
RefSeq Acc Id: XP_003811129   ⟸   XM_003811081
- UniProtKB: A0A2R9CE85 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000040267   ⟸   ENSPPAT00000063182
RefSeq Acc Id: ENSPPAP00000040256   ⟸   ENSPPAT00000063171
RefSeq Acc Id: ENSPPAP00000040264   ⟸   ENSPPAT00000063179
RefSeq Acc Id: XP_057155918   ⟸   XM_057299935
- UniProtKB: A0A2R9CE85 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_057155917   ⟸   XM_057299934
- UniProtKB: A0A2R9CE85 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000042766 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000063171.1 UniProtKB/TrEMBL
  ENSPPAT00000063179.1 UniProtKB/TrEMBL
  ENSPPAT00000063182.1 UniProtKB/TrEMBL
InterPro SCAMP UniProtKB/TrEMBL
KEGG Report pps:100970383 UniProtKB/TrEMBL
NCBI Gene SCAMP5 ENTREZGENE
PANTHER PTHR10687 UniProtKB/TrEMBL
  SECRETORY CARRIER-ASSOCIATED MEMBRANE PROTEIN 5 UniProtKB/TrEMBL
Pfam SCAMP UniProtKB/TrEMBL
UniProt A0A2R9CE85 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9CEF0_PANPA UniProtKB/TrEMBL
  A0A2R9CPD1_PANPA UniProtKB/TrEMBL