MDM1 (Mdm1 nuclear protein) - Rat Genome Database

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Gene: MDM1 (Mdm1 nuclear protein) Pan paniscus
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Symbol: MDM1
Name: Mdm1 nuclear protein
RGD ID: 11718151
Description: ENCODES a protein that exhibits microtubule binding (inferred); INVOLVED IN retina development in camera-type eye (ortholog); ASSOCIATED WITH genetic disease (ortholog); Kuhnt-Junius degeneration (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN centriole (ortholog); non-motile cilium (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Mdm1 nuclear protein homolog; nuclear protein MDM1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21076,310,352 - 76,348,641 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11276,306,749 - 76,345,038 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01265,803,548 - 65,841,404 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11268,588,541 - 68,626,359 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1268,588,541 - 68,626,326 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
MDM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21076,310,352 - 76,348,641 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11276,306,749 - 76,345,038 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01265,803,548 - 65,841,404 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11268,588,541 - 68,626,359 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1268,588,541 - 68,626,326 (-)Ensemblpanpan1.1panPan2
MDM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381268,294,566 - 68,332,362 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1268,272,443 - 68,332,381 (-)EnsemblGRCh38hg38GRCh38
GRCh371268,688,346 - 68,726,142 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361266,974,613 - 67,012,379 (-)NCBINCBI36Build 36hg18NCBI36
Build 341267,005,167 - 67,012,350NCBI
Celera1268,352,374 - 68,390,189 (-)NCBICelera
Cytogenetic Map12q15NCBI
HuRef1265,739,499 - 65,777,306 (-)NCBIHuRef
CHM1_11268,656,328 - 68,694,144 (-)NCBICHM1_1
T2T-CHM13v2.01268,274,117 - 68,311,913 (-)NCBIT2T-CHM13v2.0
Mdm1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910117,977,446 - 118,004,904 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10117,977,716 - 118,004,902 (+)EnsemblGRCm39 Ensembl
GRCm3810118,141,540 - 118,168,999 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10118,141,811 - 118,168,997 (+)EnsemblGRCm38mm10GRCm38
MGSCv3710117,578,843 - 117,606,055 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610117,544,825 - 117,571,990 (+)NCBIMGSCv36mm8
Celera10120,092,487 - 120,120,063 (+)NCBICelera
Cytogenetic Map10D2NCBI
cM Map1066.65NCBI
Mdm1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8755,615,459 - 55,651,889 (+)NCBIGRCr8
mRatBN7.2753,729,603 - 53,766,034 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl753,729,610 - 53,766,034 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx755,646,237 - 55,672,740 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0757,849,342 - 57,875,845 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0757,627,185 - 57,653,689 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0761,165,652 - 61,200,865 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl761,165,640 - 61,200,879 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0761,161,294 - 61,197,124 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4757,455,598 - 57,482,092 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera750,507,908 - 50,534,254 (+)NCBICelera
Cytogenetic Map7q22NCBI
Mdm1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545814,780,437 - 14,822,954 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545814,789,842 - 14,823,117 (-)NCBIChiLan1.0ChiLan1.0
MDM1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11010,523,656 - 10,552,824 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1010,524,328 - 10,696,181 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1010,456,983 - 10,486,143 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01010,647,765 - 10,676,917 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1010,647,770 - 10,676,899 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11010,515,759 - 10,544,917 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01010,762,218 - 10,791,382 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01010,884,769 - 10,913,942 (-)NCBIUU_Cfam_GSD_1.0
Mdm1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494547,815,517 - 47,848,237 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365456,261,875 - 6,294,621 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365456,261,887 - 6,294,487 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MDM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl532,640,945 - 32,673,638 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1532,640,939 - 32,673,624 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2535,453,845 - 35,486,488 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MDM1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11163,926,950 - 64,082,149 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1163,927,640 - 63,965,097 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037181,740,938 - 181,779,219 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mdm1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248022,648 - 9,999 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSPPAT00000040344   ⟹   ENSPPAP00000017635
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1268,588,541 - 68,626,326 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000040347   ⟹   ENSPPAP00000017638
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1268,588,541 - 68,626,326 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000040352   ⟹   ENSPPAP00000017643
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1268,588,541 - 68,626,326 (-)Ensembl
RefSeq Acc Id: XM_003808708   ⟹   XP_003808756
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21076,310,352 - 76,348,641 (-)NCBI
NHGRI_mPanPan11276,306,749 - 76,345,038 (-)NCBI
Mhudiblu_PPA_v01265,803,548 - 65,841,404 (-)NCBI
PanPan1.11268,588,541 - 68,626,359 (-)NCBI
Sequence:
RefSeq Acc Id: XM_003808709   ⟹   XP_003808757
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21076,310,352 - 76,348,641 (-)NCBI
NHGRI_mPanPan11276,306,749 - 76,345,038 (-)NCBI
Mhudiblu_PPA_v01265,803,548 - 65,841,404 (-)NCBI
PanPan1.11268,588,541 - 68,626,359 (-)NCBI
Sequence:
RefSeq Acc Id: XM_003808710   ⟹   XP_003808758
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21076,310,352 - 76,348,641 (-)NCBI
NHGRI_mPanPan11276,306,749 - 76,345,038 (-)NCBI
Mhudiblu_PPA_v01265,803,548 - 65,841,404 (-)NCBI
PanPan1.11268,588,541 - 68,626,359 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034936198   ⟹   XP_034792089
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21076,310,352 - 76,348,641 (-)NCBI
NHGRI_mPanPan11276,306,749 - 76,345,038 (-)NCBI
Mhudiblu_PPA_v01265,803,548 - 65,841,371 (-)NCBI
RefSeq Acc Id: XM_034936200   ⟹   XP_034792091
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21076,310,352 - 76,342,247 (-)NCBI
NHGRI_mPanPan11276,306,749 - 76,338,644 (-)NCBI
Mhudiblu_PPA_v01265,803,548 - 65,841,371 (-)NCBI
RefSeq Acc Id: XM_055095876   ⟹   XP_054951851
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21076,310,352 - 76,348,641 (-)NCBI
NHGRI_mPanPan11276,306,749 - 76,345,038 (-)NCBI
RefSeq Acc Id: XM_055095877   ⟹   XP_054951852
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21076,310,352 - 76,348,641 (-)NCBI
NHGRI_mPanPan11276,306,749 - 76,345,038 (-)NCBI
RefSeq Acc Id: XM_055095878   ⟹   XP_054951853
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21076,310,352 - 76,342,247 (-)NCBI
NHGRI_mPanPan11276,306,749 - 76,338,644 (-)NCBI
RefSeq Acc Id: XM_055095880   ⟹   XP_054951855
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21076,310,352 - 76,342,555 (-)NCBI
NHGRI_mPanPan11276,306,749 - 76,338,952 (-)NCBI
RefSeq Acc Id: XR_008620435
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21076,340,780 - 76,348,641 (-)NCBI
NHGRI_mPanPan11276,335,444 - 76,345,038 (-)NCBI
RefSeq Acc Id: XP_003808758   ⟸   XM_003808710
- Peptide Label: isoform X5
- UniProtKB: A0A2R9AKK6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003808756   ⟸   XM_003808708
- Peptide Label: isoform X2
- UniProtKB: A0A2R9AKK3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003808757   ⟸   XM_003808709
- Peptide Label: isoform X1
- UniProtKB: A0A2R9APH8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_034792089   ⟸   XM_034936198
- Peptide Label: isoform X3
RefSeq Acc Id: XP_034792091   ⟸   XM_034936200
- Peptide Label: isoform X7
RefSeq Acc Id: ENSPPAP00000017635   ⟸   ENSPPAT00000040344
RefSeq Acc Id: ENSPPAP00000017638   ⟸   ENSPPAT00000040347
RefSeq Acc Id: ENSPPAP00000017643   ⟸   ENSPPAT00000040352
RefSeq Acc Id: XP_054951852   ⟸   XM_055095877
- Peptide Label: isoform X6
RefSeq Acc Id: XP_054951851   ⟸   XM_055095876
- Peptide Label: isoform X4
RefSeq Acc Id: XP_054951855   ⟸   XM_055095880
- Peptide Label: isoform X7
RefSeq Acc Id: XP_054951853   ⟸   XM_055095878
- Peptide Label: isoform X7


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000031903 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000040344.1 UniProtKB/TrEMBL
  ENSPPAT00000040347.1 UniProtKB/TrEMBL
  ENSPPAT00000040352.1 UniProtKB/TrEMBL
InterPro MDM1 UniProtKB/TrEMBL
KEGG Report pps:100992817 UniProtKB/TrEMBL
NCBI Gene MDM1 ENTREZGENE
PANTHER NUCLEAR PROTEIN MDM1 UniProtKB/TrEMBL
  PTHR32078 UniProtKB/TrEMBL
Pfam MDM1 UniProtKB/TrEMBL
UniProt A0A2R9AKK3 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9AKK6 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9APH8 ENTREZGENE, UniProtKB/TrEMBL