FASTKD5 (FAST kinase domains 5) - Rat Genome Database

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Gene: FASTKD5 (FAST kinase domains 5) Pan paniscus
Analyze
Symbol: FASTKD5
Name: FAST kinase domains 5
RGD ID: 11715851
Description: ENCODES a protein that exhibits rRNA binding (ortholog); INVOLVED IN mitochondrial RNA processing (ortholog); ASSOCIATED WITH genetic disease (ortholog); Huntington's disease-like 1 (ortholog); Inosine Triphosphatase Deficiency (ortholog); FOUND IN mitochondrial nucleoid (ortholog); mitochondrion (ortholog); ribonucleoprotein granule (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: FAST kinase domain-containing protein 5, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2214,113,889 - 4,127,219 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1204,110,714 - 4,124,044 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0203,232,902 - 3,246,237 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1202,995,348 - 3,008,857 (-)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
FASTKD5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2214,113,889 - 4,127,219 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1204,110,714 - 4,124,044 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0203,232,902 - 3,246,237 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1202,995,348 - 3,008,857 (-)NCBIpanpan1.1PanPan1.1panPan2
FASTKD5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38203,146,519 - 3,159,865 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl203,146,519 - 3,159,865 (-)EnsemblGRCh38hg38GRCh38
GRCh37203,127,165 - 3,140,511 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36203,075,165 - 3,088,532 (-)NCBINCBI36Build 36hg18NCBI36
Celera203,189,124 - 3,202,490 (-)NCBICelera
Cytogenetic Map20p13NCBI
HuRef203,074,924 - 3,088,290 (-)NCBIHuRef
CHM1_1203,127,199 - 3,140,565 (-)NCBICHM1_1
T2T-CHM13v2.0203,177,419 - 3,190,765 (-)NCBIT2T-CHM13v2.0
Fastkd5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392130,455,766 - 130,471,922 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2130,455,760 - 130,471,947 (-)EnsemblGRCm39 Ensembl
GRCm382130,613,846 - 130,630,002 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2130,613,840 - 130,630,027 (-)EnsemblGRCm38mm10GRCm38
MGSCv372130,439,574 - 130,455,763 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362130,305,287 - 130,321,375 (-)NCBIMGSCv36mm8
Celera2131,838,294 - 131,854,479 (-)NCBICelera
Cytogenetic Map2F1NCBI
cM Map263.24NCBI
Fastkd5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83138,283,315 - 138,300,803 (-)NCBIGRCr8
mRatBN7.23117,830,219 - 117,847,707 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3117,830,083 - 117,847,820 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3121,724,537 - 121,741,995 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03130,322,065 - 130,339,542 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03127,980,668 - 127,998,127 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03123,154,263 - 123,170,615 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3123,154,669 - 123,157,084 (-)NCBIRnor6.0rn6Rnor6.0
Rnor_5.03129,652,391 - 129,669,888 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43118,241,786 - 118,244,753 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera3116,641,095 - 116,657,318 (-)NCBICelera
Cytogenetic Map3q36NCBI
Fastkd5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541514,052,406 - 14,054,850 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541514,052,009 - 14,063,208 (-)NCBIChiLan1.0ChiLan1.0
FASTKD5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12418,124,249 - 18,136,415 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2418,133,738 - 18,136,167 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2417,952,616 - 17,964,790 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02418,543,147 - 18,555,320 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2418,543,171 - 18,585,391 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12418,136,827 - 18,148,562 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02418,249,437 - 18,261,162 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02418,576,972 - 18,589,144 (+)NCBIUU_Cfam_GSD_1.0
Fastkd5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640167,119,024 - 167,127,522 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493648515,550,388 - 15,558,886 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FASTKD5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1732,520,654 - 32,533,813 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11732,520,625 - 32,532,786 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21736,890,800 - 36,902,724 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FASTKD5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1233,818,942 - 33,832,154 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607110,682,209 - 10,695,733 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fastkd5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247414,254,391 - 4,268,297 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008974763 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_008974763   ⟹   XP_008973011
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2214,113,889 - 4,127,219 (-)NCBI
NHGRI_mPanPan1204,110,714 - 4,124,044 (-)NCBI
Mhudiblu_PPA_v0203,232,902 - 3,246,237 (-)NCBI
PanPan1.1202,995,348 - 3,008,857 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008973011 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_008973011   ⟸   XM_008974763
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene FASTKD5 ENTREZGENE