SRSF5 (serine and arginine rich splicing factor 5)

Gene: SRSF5 (serine and arginine rich splicing factor 5) Pan paniscus

Analyze

Symbol:

SRSF5

Name:

serine and arginine rich splicing factor 5

RGD ID:

11715426

Description:

ENCODES a protein that exhibits protein kinase B binding (ortholog); RNA binding (ortholog); RS domain binding (ortholog); INVOLVED IN cellular response to insulin stimulus (ortholog); liver development (ortholog); liver regeneration (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH breast cancer (ortholog); clear cell renal cell carcinoma (ortholog); colon adenocarcinoma (ortholog); FOUND IN nuclear speck (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

serine/arginine-rich splicing factor 5

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	70,851,134 - 70,896,038 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	70,067,686 - 70,112,551 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	50,320,820 - 50,365,650 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	69,230,730 - 69,236,596 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	69,230,730 - 69,236,596 (+)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

breast cancer (ISO)

clear cell renal cell carcinoma (ISO)

colon adenocarcinoma (ISO)

genetic disease (ISO)

liver disease (ISO)

Neoplasm Metastasis (ISO)

toxic encephalopathy (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to insulin stimulus (ISO)

liver development (ISO)

liver regeneration (ISO)

positive regulation of RNA splicing (ISO)

response to insulin (ISO)

response to wounding (ISO)

Cellular Component

cytoplasm (IEA)

cytosol (IEA)

nuclear speck (ISO)

nucleolus (IEA)

nucleoplasm (IEA)

nucleus (IEA)

Molecular Function

mRNA binding (IEA)

protein binding (ISO)

protein kinase B binding (ISO)

RNA binding (IEA,ISO)

RS domain binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

spliceosome pathway (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

SRSF5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	70,851,134 - 70,896,038 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	70,067,686 - 70,112,551 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	50,320,820 - 50,365,650 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	69,230,730 - 69,236,596 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	69,230,730 - 69,236,596 (+)	Ensembl	panpan1.1		panPan2

SRSF5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	69,767,142 - 69,772,005 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	69,726,900 - 69,772,005 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	14	70,233,859 - 70,238,722 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	69,303,582 - 69,308,475 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	14	69,303,562 - 69,308,474	NCBI
Celera	14	50,297,941 - 50,302,834 (+)	NCBI		Celera
Cytogenetic Map	14	q24.1	NCBI
HuRef	14	50,402,386 - 50,407,279 (+)	NCBI		HuRef
CHM1_1	14	70,171,971 - 70,176,864 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	14	63,934,566 - 63,979,677 (+)	NCBI		T2T-CHM13v2.0

Srsf5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	80,992,308 - 80,997,277 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	80,992,278 - 80,997,281 (+)	Ensembl		GRCm39 Ensembl
GRCm38	12	80,945,495 - 80,950,507 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	80,945,504 - 80,950,507 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	12	82,046,491 - 82,051,494 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	12	81,865,424 - 81,869,347 (+)	NCBI		MGSCv36	mm8
Celera	12	82,411,025 - 82,416,029 (+)	NCBI		Celera
Cytogenetic Map	12	D1	NCBI
cM Map	12	37.2	NCBI

Srsf5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	106,333,998 - 106,341,467 (+)	NCBI		GRCr8
mRatBN7.2	6	100,605,165 - 100,610,192 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	100,605,456 - 100,610,177 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	100,766,147 - 100,770,857 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	101,065,329 - 101,070,039 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	100,445,515 - 100,450,226 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	104,611,026 - 104,640,033 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	104,611,026 - 104,615,302 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	17	21,149,626 - 21,149,932 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Rnor_5.0	6	112,776,230 - 112,805,142 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	104,728,286 - 104,732,982 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	6	104,731,761 - 104,736,439 (+)	NCBI
Celera	6	98,461,136 - 98,465,890 (+)	NCBI		Celera
Cytogenetic Map	6	q24	NCBI

Srsf5
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955466	612,221 - 617,753 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955466	612,221 - 617,087 (-)	NCBI	ChiLan1.0	ChiLan1.0

SRSF5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	43,514,048 - 43,519,019 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	43,514,076 - 43,518,481 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	43,202,998 - 43,207,951 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	43,742,032 - 43,746,990 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	43,742,032 - 43,746,989 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	43,356,400 - 43,361,355 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	43,430,128 - 43,435,082 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	43,790,108 - 43,795,064 (+)	NCBI		UU_Cfam_GSD_1.0

Srsf5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	61,234,058 - 61,239,077 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936495	12,952,646 - 12,960,681 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936495	12,952,610 - 12,957,640 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SRSF5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	93,393,426 - 93,403,011 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	93,393,379 - 93,398,510 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	99,667,698 - 99,676,353 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SRSF5
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	47,009,211 - 47,014,108 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	24	47,009,122 - 47,013,644 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666053	35,235,478 - 35,241,387 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Srsf5
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624734	31,309,656 - 31,314,891 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624734	31,309,647 - 31,314,923 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_008977815	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008977816	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008977817	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008977818	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055097736	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055097737	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055097738	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063596088	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_008620907	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010109766	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010109767	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSPPAT00000036191 ⟹ ENSPPAP00000013519

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	14	69,230,730 - 69,236,596 (+)	Ensembl

RefSeq Acc Id:

ENSPPAT00000036216 ⟹ ENSPPAP00000013544

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	14	69,232,745 - 69,236,050 (+)	Ensembl

RefSeq Acc Id:

ENSPPAT00000036219 ⟹ ENSPPAP00000013547

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	14	69,232,745 - 69,234,149 (+)	Ensembl

RefSeq Acc Id:

ENSPPAT00000036220 ⟹ ENSPPAP00000013548

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	14	69,232,745 - 69,233,714 (+)	Ensembl

RefSeq Acc Id:

XM_008977815 ⟹ XP_008976063

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	15	70,851,134 - 70,896,038 (+)	NCBI
NHGRI_mPanPan1	14	70,067,686 - 70,112,551 (+)	NCBI
Mhudiblu_PPA_v0	14	50,320,820 - 50,365,650 (+)	NCBI
PanPan1.1	14	69,230,730 - 69,236,596 (+)	NCBI

Sequence:

show sequence

TGAACGGAGAGGATTAACCAAATACCATTTGGACTTAAAAGCAGCTTGAGGCCGGGCGCAGTGG
CTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCCGATCACGAGGTCAGGAGATCG
AGACCATCCCGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGTG
TGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGAAGAATGGCGTGAACCCG
GGAGGCGGAGCCCAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTGTCTCAAA
AAAAACCAACAAAAAACAGCTTGAAACCTCTTCCAGCCACTCTCCCAGGGTGACGGACATGGAG
AAATCTGTATTCCAGCCTCAATTCAAGACAGCCTTCTAGCTGCAGTCCCATTTTCAACATTTCA
TCAGTGAAAATCCTTTCATTTAAAAAATACTTCAGTGCCTTAGTCTTCTCACCACAACAAAACC
ACACAGCTGTGGCACGGTTGAAAAAAGAACTCGAACATCTAGGAGCTCCCTGCTTTGAGGGCAA
ATTTAAATTGCAAGCAGCAAGAGATAAGGAAAGGTCAGGTATTTCTGCAAAGCTAAGTTTCTCC
TAATTAGTAATCTTCTGGGTGTCTAAGAAAAACTTTAGATACAAAAAGGGTTGCCACTTTTCTC
AGGAGACTCTTCTGGGAGAGATGATGAAAGAACCGAACGCCAAGGACTTAGCAGGGGCGAACGA
CGTCAACAGATGTCCCTCCAGACTCCGGCACCAGCCGGCCGAGCCCAAACGAGTTCTCGCCCCC
GACCCCACCCACCGCGGGAGCAGGGTTCGGTCACTCGCAGTGTCAGAGAGGCCCACGTCCTCCT
AAATTTCCGGCCCTCCCAAAACTTCCGTCTTCCGTAGGTCCAAAGGGGTGGACCCAAGGCCCAG
AGGCGTCCCCGGAAGTGACGTAGGACGCGCCCTCCATTTTGTGGAGCGCCAGAGCTGCTAAGTG
CGTCAGTTGTGGAGAGGCGTAGACGAGTTAAGTCCTGGTCTGCGTGGAGGTCGACGACTCCGTC
GCAGACTACGGACCTGTCTGGGTCTCAGCCGCCAAAGACCTCGTCCGGTAGGAAGTACTAGCCG
GACATCATGAGTGGCTGTCGGGTATTCATCGGGAGACTAAATCCAGCGGCCAGGGAGAAGGACG
TGGAAAGATTCTTCAAGGGATATGGACGGATAAGAGATATTGATCTGAAAAGAGGCTTTGGTTT
TGTGGAATTTGAGGATCCAAGGGATGCAGATGATGCTGTGTATGAGCTTGATGGAAAAGAACTC
TGTAGTGAAAGGGTTACTATTGAACATGCTAGGGCTCGGTCACGAGGTGGAAGAGGTAGAGGAC
GATACTCTGACCGTTTTAGTAGTCGCAGACCTCGAAATGATAGACGAAATGCTCCACCTGTAAG
AACAGAAAATCGTCTTATAGTTGAGAATTTATCCTCAAGAGTCAGCTGGCAGGATCTCAAAGAT
TTCATGAGACAAGCTGGGGAAGTAACGTTTGCGGATGCACACCGACCTAAATTAAATGAAGGGG
TGGTTGAGTTTGCCTCTTATGGTGACTTAAAGAATGCTATTGAAAAACTTTCTGGAAAGGAAAT
AAATGGGAGAAAAATAAAATTAATTGAAGGCAGCAAAAGGCACAGTAGGTCAAGAAGCAGGTCT
CGATCCCGGACCAGAAGTTCCTCTAGGTCTCGTAGCCGATCCCGTTCCCGTAGTCGCAAATCTT
ACAGCCGGTCAAGAAGCAGGAGCAGGAGCCGGAGCCGGAGCAAGTCCCGTTCTGTTAGTAGGTC
TCCCGTGCCTGAGAAGAGCCAGAAACGTGGTTCTTCAAGTAGATCTAAGTCTCCAGCATCTGTG
GATCGCCAGAGGTCCCGGTCCCGATCAAGGTCCAGATCAGTTGACAGTGGCAATTAAACTGTAA
ATAACTTGCCCTGGGGGCCTTTTTTTAAAAAACAAAAACCACAAAAATTCCCAAACCATACTTG
CTAAAAATTCTGGTAAGTATGTGCTTTTCTGTGGGGGTGGGATTTGGAAGGGGGGTTGGGTTGG
GCTGGATATCTTTGTAGATGTGGACCACCAAGGGGTTGTTGAAAACTAATTGTATTAAATGTCT
TTTGATAAGCCTTCTGCTCACATTTTTGTGAATGTCTGAAGTATATAGTTTGTGTATATTGACA
GAGCTCTTTTATAACTAAAGCAAATTTAATTTTTTTGTACTAGAAAAAAATTTGAACATTTTAG
TTCTTGGTTATAAAAATATGTTAATTCAGAATTAGTTTAATGCCTTAATTAAACTAATTAATAG
CTTTGGACACTTAAAAGAGCTCTAAATTTGCTTGTACATAAAGGCTTAATTTGTTTTCCTTGTT
AGGGTCAAGGGTGTCCTCCACTCTTTAACAGCTGCCGGACAGACACATTAAAGCAGCTGTTTGT
TATTGATAATAAAATATTATAAAACTA

hide sequence

RefSeq Acc Id:

XM_008977816 ⟹ XP_008976064

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	15	70,891,109 - 70,896,038 (+)	NCBI
NHGRI_mPanPan1	14	70,107,662 - 70,112,551 (+)	NCBI
Mhudiblu_PPA_v0	14	50,360,762 - 50,365,650 (+)	NCBI
PanPan1.1	14	69,231,704 - 69,236,596 (+)	NCBI

Sequence:

show sequence

GTGACGTAGGACGCGCCCTCCATTTTGTGGAGCGCCAGAGCTGCTAAGTGCGTCAGTTGTGGAG
AGGCGTAGACGAGTTAAGTCCTGGTCTGCGTGGAGGTCGACGACTCCGTCGCAGACTACGGACC
TGTCTGGGTCTCAGCCGCCAAAGACCTCGTCCGGAAGTACTAGCCGGACATCATGAGTGGCTGT
CGGGTATTCATCGGGAGACTAAATCCAGCGGCCAGGGAGAAGGACGTGGAAAGATTCTTCAAGG
GATATGGACGGATAAGAGATATTGATCTGAAAAGAGGCTTTGGTTTTGTGGAATTTGAGGATCC
AAGGGATGCAGATGATGCTGTGTATGAGCTTGATGGAAAAGAACTCTGTAGTGAAAGGGTTACT
ATTGAACATGCTAGGGCTCGGTCACGAGGTGGAAGAGGTAGAGGACGATACTCTGACCGTTTTA
GTAGTCGCAGACCTCGAAATGATAGACGAAATGCTCCACCTGTAAGAACAGAAAATCGTCTTAT
AGTTGAGAATTTATCCTCAAGAGTCAGCTGGCAGGATCTCAAAGATTTCATGAGACAAGCTGGG
GAAGTAACGTTTGCGGATGCACACCGACCTAAATTAAATGAAGGGGTGGTTGAGTTTGCCTCTT
ATGGTGACTTAAAGAATGCTATTGAAAAACTTTCTGGAAAGGAAATAAATGGGAGAAAAATAAA
ATTAATTGAAGGCAGCAAAAGGCACAGTAGGTCAAGAAGCAGGTCTCGATCCCGGACCAGAAGT
TCCTCTAGGTCTCGTAGCCGATCCCGTTCCCGTAGTCGCAAATCTTACAGCCGGTCAAGAAGCA
GGAGCAGGAGCCGGAGCCGGAGCAAGTCCCGTTCTGTTAGTAGGTCTCCCGTGCCTGAGAAGAG
CCAGAAACGTGGTTCTTCAAGTAGATCTAAGTCTCCAGCATCTGTGGATCGCCAGAGGTCCCGG
TCCCGATCAAGGTCCAGATCAGTTGACAGTGGCAATTAAACTGTAAATAACTTGCCCTGGGGGC
CTTTTTTTAAAAAACAAAAACCACAAAAATTCCCAAACCATACTTGCTAAAAATTCTGGTAAGT
ATGTGCTTTTCTGTGGGGGTGGGATTTGGAAGGGGGGTTGGGTTGGGCTGGATATCTTTGTAGA
TGTGGACCACCAAGGGGTTGTTGAAAACTAATTGTATTAAATGTCTTTTGATAAGCCTTCTGCT
CACATTTTTGTGAATGTCTGAAGTATATAGTTTGTGTATATTGACAGAGCTCTTTTATAACTAA
AGCAAATTTAATTTTTTTGTACTAGAAAAAAATTTGAACATTTTAGTTCTTGGTTATAAAAATA
TGTTAATTCAGAATTAGTTTAATGCCTTAATTAAACTAATTAATAGCTTTGGACACTTAAAAGA
GCTCTAAATTTGCTTGTACATAAAGGCTTAATTTGTTTTCCTTGTTAGGGTCAAGGGTGTCCTC
CACTCTTTAACAGCTGCCGGACAGACACATTAAAGCAGCTGTTTGTTATTGATAATAAAATATT
ATAAAACTA

hide sequence

RefSeq Acc Id:

XM_008977817 ⟹ XP_008976065

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	15	70,891,040 - 70,896,038 (+)	NCBI
NHGRI_mPanPan1	14	70,107,784 - 70,112,551 (+)	NCBI
Mhudiblu_PPA_v0	14	50,360,813 - 50,365,650 (+)	NCBI
PanPan1.1	14	69,231,725 - 69,236,596 (+)	NCBI

Sequence:

show sequence

ATTTTGTGGAGCGCCAGAGCTGCTAAGTGCGTCAGTTGTGGAGAGGCGTAGACGAGTTAAGTCC
TGGTCTGCGTGGAGGTCGACGACTCCGTCGCAGACTACGGACCTGTCTGGGTCTCAGCCGCCAA
AGACCTCGTCCGGTAGGTGAGTGGCTCACTTTGAGGGCAAGCCTTCTCGGATCGAGGCTTCTTC
ATGGCCGCTCTCTTTGCGGAGGATGGCGTCTAATGAGCGCAGTTGATTCGAGGAAGTACTAGCC
GGACATCATGAGTGGCTGTCGGGTATTCATCGGGAGACTAAATCCAGCGGCCAGGGAGAAGGAC
GTGGAAAGATTCTTCAAGGGATATGGACGGATAAGAGATATTGATCTGAAAAGAGGCTTTGGTT
TTGTGGAATTTGAGGATCCAAGGGATGCAGATGATGCTGTGTATGAGCTTGATGGAAAAGAACT
CTGTAGTGAAAGGGTTACTATTGAACATGCTAGGGCTCGGTCACGAGGTGGAAGAGGTAGAGGA
CGATACTCTGACCGTTTTAGTAGTCGCAGACCTCGAAATGATAGACGAAATGCTCCACCTGTAA
GAACAGAAAATCGTCTTATAGTTGAGAATTTATCCTCAAGAGTCAGCTGGCAGGATCTCAAAGA
TTTCATGAGACAAGCTGGGGAAGTAACGTTTGCGGATGCACACCGACCTAAATTAAATGAAGGG
GTGGTTGAGTTTGCCTCTTATGGTGACTTAAAGAATGCTATTGAAAAACTTTCTGGAAAGGAAA
TAAATGGGAGAAAAATAAAATTAATTGAAGGCAGCAAAAGGCACAGTAGGTCAAGAAGCAGGTC
TCGATCCCGGACCAGAAGTTCCTCTAGGTCTCGTAGCCGATCCCGTTCCCGTAGTCGCAAATCT
TACAGCCGGTCAAGAAGCAGGAGCAGGAGCCGGAGCCGGAGCAAGTCCCGTTCTGTTAGTAGGT
CTCCCGTGCCTGAGAAGAGCCAGAAACGTGGTTCTTCAAGTAGATCTAAGTCTCCAGCATCTGT
GGATCGCCAGAGGTCCCGGTCCCGATCAAGGTCCAGATCAGTTGACAGTGGCAATTAAACTGTA
AATAACTTGCCCTGGGGGCCTTTTTTTAAAAAACAAAAACCACAAAAATTCCCAAACCATACTT
GCTAAAAATTCTGGTAAGTATGTGCTTTTCTGTGGGGGTGGGATTTGGAAGGGGGGTTGGGTTG
GGCTGGATATCTTTGTAGATGTGGACCACCAAGGGGTTGTTGAAAACTAATTGTATTAAATGTC
TTTTGATAAGCCTTCTGCTCACATTTTTGTGAATGTCTGAAGTATATAGTTTGTGTATATTGAC
AGAGCTCTTTTATAACTAAAGCAAATTTAATTTTTTTGTACTAGAAAAAAATTTGAACATTTTA
GTTCTTGGTTATAAAAATATGTTAATTCAGAATTAGTTTAATGCCTTAATTAAACTAATTAATA
GCTTTGGACACTTAAAAGAGCTCTAAATTTGCTTGTACATAAAGGCTTAATTTGTTTTCCTTGT
TAGGGTCAAGGGTGTCCTCCACTCTTTAACAGCTGCCGGACAGACACATTAAAGCAGCTGTTTG
TTATTGATAATAAAATATTATAAAACTA

hide sequence

RefSeq Acc Id:

XM_008977818 ⟹ XP_008976066

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	15	70,891,134 - 70,896,038 (+)	NCBI
NHGRI_mPanPan1	14	70,107,647 - 70,112,551 (+)	NCBI
Mhudiblu_PPA_v0	14	50,360,765 - 50,365,650 (+)	NCBI
PanPan1.1	14	69,231,705 - 69,236,596 (+)	NCBI

Sequence:

show sequence

TGACGTAGGACGCGCCCTCCATTTTGTGGAGCGCCAGAGCTGCTAAGTGCGTCAGTTGTGGAGA
GGCGTAGACGAGTTAAGTCCTGGTCTGCGTGGAGGTCGACGACTCCGTCGCAGACTACGGACCT
GTCTGGGTCTCAGCCGCCAAAGACCTCGTCCGGTAGGAAGTACTAGCCGGACATCATGAGTGGC
TGTCGGGTATTCATCGGGAGACTAAATCCAGCGGCCAGGGAGAAGGACGTGGAAAGATTCTTCA
AGGGATATGGACGGATAAGAGATATTGATCTGAAAAGAGGCTTTGGTTTTGTGGAATTTGAGGA
TCCAAGGGATGCAGATGATGCTGTGTATGAGCTTGATGGAAAAGAACTCTGTAGTGAAAGGGTT
ACTATTGAACATGCTAGGGCTCGGTCACGAGGTGGAAGAGGTAGAGGACGATACTCTGACCGTT
TTAGTAGTCGCAGACCTCGAAATGATAGACGAAATGCTCCACCTGTAAGAACAGAAAATCGTCT
TATAGTTGAGAATTTATCCTCAAGAGTCAGCTGGCAGGATCTCAAAGATTTCATGAGACAAGCT
GGGGAAGTAACGTTTGCGGATGCACACCGACCTAAATTAAATGAAGGGGTGGTTGAGTTTGCCT
CTTATGGTGACTTAAAGAATGCTATTGAAAAACTTTCTGGAAAGGAAATAAATGGGAGAAAAAT
AAAATTAATTGAAGGCAGCAAAAGGCACAGGTCAAGAAGCAGGTCTCGATCCCGGACCAGAAGT
TCCTCTAGGTCTCGTAGCCGATCCCGTTCCCGTAGTCGCAAATCTTACAGCCGGTCAAGAAGCA
GGAGCAGGAGCCGGAGCCGGAGCAAGTCCCGTTCTGTTAGTAGGTCTCCCGTGCCTGAGAAGAG
CCAGAAACGTGGTTCTTCAAGTAGATCTAAGTCTCCAGCATCTGTGGATCGCCAGAGGTCCCGG
TCCCGATCAAGGTCCAGATCAGTTGACAGTGGCAATTAAACTGTAAATAACTTGCCCTGGGGGC
CTTTTTTTAAAAAACAAAAACCACAAAAATTCCCAAACCATACTTGCTAAAAATTCTGGTAAGT
ATGTGCTTTTCTGTGGGGGTGGGATTTGGAAGGGGGGTTGGGTTGGGCTGGATATCTTTGTAGA
TGTGGACCACCAAGGGGTTGTTGAAAACTAATTGTATTAAATGTCTTTTGATAAGCCTTCTGCT
CACATTTTTGTGAATGTCTGAAGTATATAGTTTGTGTATATTGACAGAGCTCTTTTATAACTAA
AGCAAATTTAATTTTTTTGTACTAGAAAAAAATTTGAACATTTTAGTTCTTGGTTATAAAAATA
TGTTAATTCAGAATTAGTTTAATGCCTTAATTAAACTAATTAATAGCTTTGGACACTTAAAAGA
GCTCTAAATTTGCTTGTACATAAAGGCTTAATTTGTTTTCCTTGTTAGGGTCAAGGGTGTCCTC
CACTCTTTAACAGCTGCCGGACAGACACATTAAAGCAGCTGTTTGTTATTGATAATAAAATATT
ATAAAACTA

hide sequence

RefSeq Acc Id:

XM_055097736 ⟹ XP_054953711

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	15	70,891,152 - 70,896,038 (+)	NCBI
NHGRI_mPanPan1	14	70,107,784 - 70,112,551 (+)	NCBI

RefSeq Acc Id:

XM_055097737 ⟹ XP_054953712

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	15	70,891,149 - 70,896,038 (+)	NCBI
NHGRI_mPanPan1	14	70,107,662 - 70,112,551 (+)	NCBI

RefSeq Acc Id:

XM_055097738 ⟹ XP_054953713

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	15	70,891,146 - 70,893,815 (+)	NCBI
NHGRI_mPanPan1	14	70,107,784 - 70,111,021 (+)	NCBI

RefSeq Acc Id:

XM_063596088 ⟹ XP_063452158

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	15	70,891,134 - 70,893,815 (+)	NCBI

RefSeq Acc Id:

XR_008620907

Type:

NON-CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	15	70,891,134 - 70,896,038 (+)	NCBI
NHGRI_mPanPan1	14	70,107,647 - 70,112,551 (+)	NCBI

RefSeq Acc Id:

XR_010109766

Type:

NON-CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	15	70,891,152 - 70,896,038 (+)	NCBI

RefSeq Acc Id:

XR_010109767

Type:

NON-CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	15	70,891,150 - 70,896,038 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_008976063	(Get FASTA)	NCBI Sequence Viewer
	XP_008976064	(Get FASTA)	NCBI Sequence Viewer
	XP_008976065	(Get FASTA)	NCBI Sequence Viewer
	XP_008976066	(Get FASTA)	NCBI Sequence Viewer
	XP_054953711	(Get FASTA)	NCBI Sequence Viewer
	XP_054953712	(Get FASTA)	NCBI Sequence Viewer
	XP_054953713	(Get FASTA)	NCBI Sequence Viewer
	XP_063452158	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000013519
	ENSPPAP00000013519.1
	ENSPPAP00000013544
	ENSPPAP00000013544.1
	ENSPPAP00000013547.1
	ENSPPAP00000013548.1

RefSeq Acc Id:	XP_008976063 ⟸ XM_008977815
- Peptide Label:	isoform X1
- UniProtKB:	A0A2R9A8C0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS ERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVSWQDLKDFM RQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIEGSKRHSRSRSRSRS RTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPEKSQKRGSSSRSKSPASVDR QRSRSRSRSRSVDSGN hide sequence

RefSeq Acc Id:	XP_008976064 ⟸ XM_008977816
- Peptide Label:	isoform X1
- UniProtKB:	A0A2R9A8C0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS ERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVSWQDLKDFM RQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIEGSKRHSRSRSRSRS RTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPEKSQKRGSSSRSKSPASVDR QRSRSRSRSRSVDSGN hide sequence

RefSeq Acc Id:

XP_008976066 ⟸ XM_008977818

- Peptide Label:

isoform X2

- Sequence:

show sequence

MSGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS
ERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVSWQDLKDFM
RQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIEGSKRHRSRSRSRSR
TRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPEKSQKRGSSSRSKSPASVDRQ
RSRSRSRSRSVDSGN

hide sequence

RefSeq Acc Id:	XP_008976065 ⟸ XM_008977817
- Peptide Label:	isoform X1
- UniProtKB:	A0A2R9A8C0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS ERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVSWQDLKDFM RQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIEGSKRHSRSRSRSRS RTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPEKSQKRGSSSRSKSPASVDR QRSRSRSRSRSVDSGN hide sequence

RefSeq Acc Id:

ENSPPAP00000013547 ⟸ ENSPPAT00000036219

RefSeq Acc Id:

ENSPPAP00000013544 ⟸ ENSPPAT00000036216

RefSeq Acc Id:

ENSPPAP00000013548 ⟸ ENSPPAT00000036220

RefSeq Acc Id:

ENSPPAP00000013519 ⟸ ENSPPAT00000036191

RefSeq Acc Id:	XP_054953712 ⟸ XM_055097737
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_054953711 ⟸ XM_055097736
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_054953713 ⟸ XM_055097738
- Peptide Label:	isoform X3
- UniProtKB:	A0A2R9ADM0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063452158 ⟸ XM_063596088
- Peptide Label:	isoform X3
- UniProtKB:	A0A2R9ADM0 (UniProtKB/TrEMBL)

Protein Domains

RRM

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000029921	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000036191.1	UniProtKB/TrEMBL
	ENSPPAT00000036216.1	UniProtKB/TrEMBL
	ENSPPAT00000036219.1	UniProtKB/TrEMBL
	ENSPPAT00000036220.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.70.330	UniProtKB/TrEMBL
InterPro	Nucleotide-bd_a/b_plait_sf	UniProtKB/TrEMBL
	RBD_domain_sf	UniProtKB/TrEMBL
	RRM_dom	UniProtKB/TrEMBL
KEGG Report	pps:100985817	UniProtKB/TrEMBL
NCBI Gene	SRSF5	ENTREZGENE
PANTHER	RIBONUCLEOPROTEIN RB97D	UniProtKB/TrEMBL
	RIBONUCLEOPROTEIN RB97D	UniProtKB/TrEMBL
	RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN	UniProtKB/TrEMBL
	RRM DOMAIN-CONTAINING PROTEIN	UniProtKB/TrEMBL
Pfam	RRM_1	UniProtKB/TrEMBL
PROSITE	RRM	UniProtKB/TrEMBL
SMART	RRM	UniProtKB/TrEMBL
Superfamily-SCOP	SSF54928	UniProtKB/TrEMBL
UniProt	A0A2R9A8C0	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R9A8D6_PANPA	UniProtKB/TrEMBL
	A0A2R9ADH1_PANPA	UniProtKB/TrEMBL
	A0A2R9ADM0	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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