TSPAN32 (tetraspanin 32) - Rat Genome Database

Name: TSPAN32
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: TSPAN32 (tetraspanin 32) Pan paniscus

Analyze

Symbol:

TSPAN32

Name:

tetraspanin 32

RGD ID:

11714980

Description:

INVOLVED IN blood coagulation (ortholog); cytoskeleton organization (ortholog); defense response to protozoan (ortholog); ASSOCIATED WITH delta beta-thalassemia (ortholog); developmental and epileptic encephalopathy (ortholog); early infantile epileptic encephalopathy (ortholog); FOUND IN cell surface (inferred); integrin alphaIIb-beta3 complex (inferred); membrane (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

tetraspanin-32

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TSPAN32 (tetraspanin 32)	NCBI	Ortholog
Mus musculus (house mouse):	Tspan32 (tetraspanin 32)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Tspan32 (tetraspanin 32)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Tspan32 (tetraspanin 32)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TSPAN32 (tetraspanin 32)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tspan32 (tetraspanin 32)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TSPAN32 (tetraspanin 32)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TSPAN32 (tetraspanin 32)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Tspan32 (tetraspanin 32)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	4,725,715 - 4,742,015 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	3,937,515 - 3,953,633 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	2,339,941 - 2,357,049 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	2,367,674 - 2,384,209 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	2,367,674 - 2,384,209 (+)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

delta beta-thalassemia (ISO)

developmental and epileptic encephalopathy (ISO)

early infantile epileptic encephalopathy (ISO)

genetic disease (ISO)

neuronal ceroid lipofuscinosis (ISO)

Segawa Syndrome, Autosomal Recessive (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

blood coagulation (IEA,ISO)

cytoskeleton organization (IEA,ISO)

defense response to protozoan (IEA,ISO)

hemostasis (IEA,ISO)

integrin-mediated signaling pathway (IEA,ISO)

negative regulation of myeloid dendritic cell activation (IEA,ISO)

negative regulation of T cell proliferation (IEA,ISO)

platelet aggregation (IEA,ISO)

regulation of defense response to virus (IEA,ISO)

T cell proliferation (IEA,ISO)

Cellular Component

cell surface (IEA)

integrin alphaIIb-beta3 complex (IEA)

membrane (IEA)

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

TSPAN32
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	4,725,715 - 4,742,015 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	3,937,515 - 3,953,633 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	2,339,941 - 2,357,049 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	2,367,674 - 2,384,209 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	2,367,674 - 2,384,209 (+)	Ensembl	panpan1.1		panPan2

TSPAN32
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	2,302,013 - 2,318,204 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	2,301,997 - 2,318,204 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	2,323,243 - 2,339,434 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	2,279,819 - 2,296,006 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	11	2,280,513 - 2,296,006	NCBI
Celera	11	2,358,117 - 2,374,304 (+)	NCBI		Celera
Cytogenetic Map	11	p15.5	NCBI
HuRef	11	2,113,424 - 2,129,497 (+)	NCBI		HuRef
CHM1_1	11	2,322,190 - 2,338,368 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	11	2,391,457 - 2,407,521 (+)	NCBI		T2T-CHM13v2.0

Tspan32
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	142,558,644 - 142,573,223 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	142,558,783 - 142,573,381 (+)	Ensembl		GRCm39 Ensembl
GRCm38	7	143,004,907 - 143,019,486 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	143,005,046 - 143,019,644 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	150,190,951 - 150,205,391 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	142,815,081 - 142,829,034 (+)	NCBI		MGSCv36	mm8
Celera	7	142,760,651 - 142,775,091 (+)	NCBI		Celera
Cytogenetic Map	7	F5	NCBI
cM Map	7	88.09	NCBI

Tspan32
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	207,619,566 - 207,633,885 (+)	NCBI		GRCr8
mRatBN7.2	1	198,190,128 - 198,204,447 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	198,190,164 - 198,204,445 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	1	216,189,535 - 216,206,202 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	216,191,886 - 216,206,200 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	223,053,403 - 223,067,728 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	203,281,261 - 203,295,227 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	203,434,747 - 203,448,969 (+)	NCBI
Celera	1	195,756,899 - 195,773,648 (+)	NCBI		Celera
Cytogenetic Map	1	q41	NCBI

Tspan32
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955422	14,101,833 - 14,116,101 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955422	14,101,833 - 14,121,784 (+)	NCBI	ChiLan1.0	ChiLan1.0

TSPAN32
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	18	46,422,499 - 46,438,512 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	18	46,422,259 - 46,437,272 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	18	45,032,203 - 45,047,011 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	47,102,105 - 47,116,919 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	18	47,102,122 - 47,118,201 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	18	46,550,136 - 46,564,918 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	46,130,586 - 46,145,391 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	46,877,391 - 46,892,196 (+)	NCBI		UU_Cfam_GSD_1.0

Tspan32
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	2,672,142 - 2,686,673 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936794	615,540 - 629,394 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936794	615,540 - 629,394 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TSPAN32
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	1,584,842 - 1,602,888 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	1,584,486 - 1,599,411 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

TSPAN32
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	2,110,218 - 2,125,839 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	2,110,467 - 2,125,616 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	99,312,474 - 99,327,357 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tspan32
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624767	15,143,732 - 15,157,206 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624767	15,107,448 - 15,160,379 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003816059	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034931946	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSPPAT00000059019 ⟹ ENSPPAP00000036128

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	11	2,367,674 - 2,384,209 (+)	Ensembl

RefSeq Acc Id:

ENSPPAT00000059025 ⟹ ENSPPAP00000036134

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	11	2,368,525 - 2,383,932 (+)	Ensembl

RefSeq Acc Id:

XM_003816059 ⟹ XP_003816107

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	9	4,725,715 - 4,742,015 (+)	NCBI
NHGRI_mPanPan1	11	3,937,515 - 3,953,633 (+)	NCBI
Mhudiblu_PPA_v0	11	2,339,941 - 2,357,049 (+)	NCBI
PanPan1.1	11	2,367,674 - 2,384,209 (+)	NCBI

Sequence:

show sequence

ATGTTGACAGACAGACAGAGGGGCGGATGCAGCCTACCTCCTGGGCAGTGAGCTGCGGTCTGAG
GCCCCTGCCCAGCTGGAAACCACAGGGAGGGGAAGGGAGGGGAGGAGAGGAGAGGAGAGGAACC
GTCATGGGGCCTTGGAGTCGAGTCAGGGTTGCCAAATGCCAGATGCTGGTCACCTGCTTCTTTA
TCTTGCTGCTGGGCCTCTCTGTGGCCACCATGGTGACTCTTACCTACTTCGGGGCCCACTTTGC
TGTCATCCGCCGAGCATCCCTGGAGAAGAACCCGTACCAGGCTGTGCACCAATGGGCCTTCTCT
GCGGGGTTGAGCCTGGTGGGCCTCCTGACTCTGGGAGCCGTGCTGAGCGCTGTAGCCACCGTGA
AGGAGGCCCAGGGCCTCATGGCGGGGGGCTTCCTGTGCTTCTCCCTGGCGTTCTGCGCACAGGT
GCAGGTGGTGTTCTGGAGACTCCACAGCCCCACCCAGGTGGAGGACGCCATGCTGGACACCTAC
GACCTGGTATATGAGCAGGCGATGAAAGGCACGTCCCACGTCCGGCGGCAGGAGCTGGCGGCCA
TCCAGGACGTGTTTCTGTGCTGTGGGAAGAGGTCTCCTTTCAGCCGTCTGGGGAGCACAGAGGC
TGACCTGTGTCAGGGAGAGGAGGCGGCGAGAGAGGACTGCCTTCAGGGCATCCGGAGCTTCCTG
AGGACACACCAGCAGGTCGCCTCCAGCCTGACCAGCATCGGCCTGGCCCTCACGGTGTCCGCCT
TGCTCCTCAGCTCCTTCCTGTGGTTTGCCATCCGCTGTGGCTGCAGCTTGGACCGCAAGGGCAA
ATACACCCTGACCCCACGAGCATGTGGCCGCCAGCCCCAGGAGCCTAGCCTCTTGAGATGCTCC
CAGGGTGGACCCGCACATTGTCTCCACTCCGAAGCAGATGCTATTGGTCCAAGAGGATGCTTGG
GTAGTCTTCGGTGGCTGCAGGAGAGCGATGCTGCGCCTCTGCCCCTCTCCTGCCACCCGCCTGC
CCACAGAGCTCTCCAGGGCAGAAGTGGCGGTAGGCTCAGCGGGTGCCCTGAGCGGGGTCTCTCA
GACTGACGTCAGGCCTTGGTGGGCTGCACTCTCACCTGGAGGCTCCGGGGAAGCATCTGCCTCC
AGGACCATTCAGGCTGTTGACAAGTCAACTGCTCATGGCTGTAGGACTGAGGTTCCCACGTCCT
TGTCCCTGGTCCTGTGGTCCCTCCACCTTCAAACCAGCAATGGTGCATTGAGCAAATTGTGGTC
AAATATACATCACATCAAATTTACCATCTTAACCATTTGTTAAGTGTATGGTTTGTGGCATTAA
ATACATTCACATTGTTGTGCAACCATC

hide sequence

Protein Sequences


Protein RefSeqs	XP_003816107	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000036128.1
	ENSPPAP00000036134.1

RefSeq Acc Id:

XP_003816107 ⟸ XM_003816059

- Sequence:

show sequence

MQPTSWAVSCGLRPLPSWKPQGGEGRGGEERRGTVMGPWSRVRVAKCQMLVTCFFILLLGLSVA
TMVTLTYFGAHFAVIRRASLEKNPYQAVHQWAFSAGLSLVGLLTLGAVLSAVATVKEAQGLMAG
GFLCFSLAFCAQVQVVFWRLHSPTQVEDAMLDTYDLVYEQAMKGTSHVRRQELAAIQDVFLCCG
KRSPFSRLGSTEADLCQGEEAAREDCLQGIRSFLRTHQQVASSLTSIGLALTVSALLLSSFLWF
AIRCGCSLDRKGKYTLTPRACGRQPQEPSLLRCSQGGPAHCLHSEADAIGPRGCLGSLRWLQES
DAAPLPLSCHPPAHRALQGRSGGRLSGCPERGLSD

hide sequence

RefSeq Acc Id:

ENSPPAP00000036128 ⟸ ENSPPAT00000059019

RefSeq Acc Id:

ENSPPAP00000036134 ⟸ ENSPPAT00000059025

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000040841	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000059019.1	UniProtKB/TrEMBL
	ENSPPAT00000059025.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.1450.10	UniProtKB/TrEMBL
InterPro	PHEMX_LEL	UniProtKB/TrEMBL
	Tetraspanin/Peripherin	UniProtKB/TrEMBL
	Tetraspanin_EC2_sf	UniProtKB/TrEMBL
NCBI Gene	TSPAN32	ENTREZGENE
Pfam	Tetraspanin	UniProtKB/TrEMBL
Superfamily-SCOP	SSF48652	UniProtKB/TrEMBL
UniProt	A0A2R9C2Z0_PANPA	UniProtKB/TrEMBL
	A0A2R9C5G1_PANPA	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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