TPRG1L (tumor protein p63 regulated 1 like) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: TPRG1L (tumor protein p63 regulated 1 like) Pan paniscus
Analyze
Symbol: TPRG1L
Name: tumor protein p63 regulated 1 like
RGD ID: 11714436
Description: ENCODES a protein that exhibits calmodulin binding (ortholog); identical protein binding (ortholog); INVOLVED IN calmodulin dependent kinase signaling pathway (ortholog); negative regulation of synaptic transmission (ortholog); presynaptic modulation of chemical synaptic transmission (ortholog); ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog); Ehlers-Danlos syndrome spondylodysplastic type 2 (ortholog); genetic disease (ortholog); FOUND IN calyx of Held (ortholog); extrinsic component of synaptic vesicle membrane (ortholog); glutamatergic synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: tumor protein p63-regulated gene 1-like protein-like
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21224,678,694 - 224,683,810 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11223,323,817 - 223,328,909 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012,296,601 - 2,301,687 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.113,420,294 - 3,425,007 (+)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
TPRG1L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21224,678,694 - 224,683,810 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11223,323,817 - 223,328,909 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012,296,601 - 2,301,687 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.113,420,294 - 3,425,007 (+)NCBIpanpan1.1PanPan1.1panPan2
TPRG1L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3813,625,015 - 3,630,127 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl13,625,015 - 3,630,127 (+)EnsemblGRCh38hg38GRCh38
GRCh3713,541,579 - 3,546,691 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3613,531,416 - 3,536,555 (+)NCBINCBI36Build 36hg18NCBI36
Celera12,796,682 - 2,801,797 (+)NCBICelera
Cytogenetic Map1p36.32NCBI
HuRef12,837,972 - 2,843,088 (+)NCBIHuRef
CHM1_113,528,259 - 3,533,375 (+)NCBICHM1_1
T2T-CHM13v2.013,135,110 - 3,140,200 (+)NCBIT2T-CHM13v2.0
Tprg1l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394154,241,942 - 154,246,763 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4154,241,942 - 154,245,123 (-)EnsemblGRCm39 Ensembl
GRCm384154,157,485 - 154,162,306 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4154,157,485 - 154,160,666 (-)EnsemblGRCm38mm10GRCm38
MGSCv374153,531,594 - 153,534,793 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364153,001,285 - 153,004,484 (-)NCBIMGSCv36mm8
Celera4156,441,404 - 156,444,603 (-)NCBICelera
Cytogenetic Map4E2NCBI
cM Map483.88NCBI
Tprg1l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85170,004,577 - 170,007,784 (-)NCBIGRCr8
mRatBN7.25164,722,151 - 164,725,358 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5164,710,285 - 164,725,425 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5167,426,253 - 167,429,460 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05169,247,671 - 169,250,878 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05169,210,188 - 169,213,395 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05171,456,299 - 171,459,488 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5171,456,302 - 171,459,488 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05174,938,793 - 174,941,982 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera5162,933,950 - 162,937,177 (-)NCBICelera
Cytogenetic Map5q36NCBI
Tprg1l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554868,007,842 - 8,013,910 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554868,007,678 - 8,013,996 (-)NCBIChiLan1.0ChiLan1.0
TPRG1L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1558,155,178 - 58,159,880 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl558,157,096 - 58,159,880 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha558,166,902 - 58,170,424 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0558,357,363 - 58,360,885 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl558,357,400 - 58,360,877 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1558,371,849 - 58,375,361 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0558,240,675 - 58,244,129 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0558,630,852 - 58,634,383 (+)NCBIUU_Cfam_GSD_1.0
Tprg1l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505829,207,191 - 29,212,194 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936737253,752 - 258,767 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TPRG1L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl665,150,903 - 65,154,429 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1665,150,897 - 65,154,311 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2659,884,843 - 59,888,257 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TPRG1L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120128,057,629 - 128,062,545 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20128,059,137 - 128,062,455 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605432,334,644 - 32,339,575 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tprg1l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248186,850,486 - 6,858,136 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248186,850,479 - 6,857,979 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_034953823   ⟹   XP_034809714
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21224,678,694 - 224,683,810 (-)NCBI
NHGRI_mPanPan11223,323,817 - 223,328,909 (-)NCBI
Mhudiblu_PPA_v012,296,601 - 2,301,687 (+)NCBI
Protein Sequences
Protein RefSeqs XP_034809714 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_034809714   ⟸   XM_034953823


Additional Information

Database Acc Id Source(s)
NCBI Gene TPRG1L ENTREZGENE