SHISA8 (shisa family member 8) - Rat Genome Database

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Gene: SHISA8 (shisa family member 8) Pan paniscus
Analyze
Symbol: SHISA8
Name: shisa family member 8
RGD ID: 11713536
Description: ASSOCIATED WITH adenylosuccinase lyase deficiency (ortholog); common variable immunodeficiency 4 (ortholog); genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: shisa homolog 8
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22351,739,276 - 51,744,426 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12254,438,476 - 54,443,664 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02222,802,111 - 22,807,652 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12240,887,263 - 40,889,441 (-)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
SHISA8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22351,739,276 - 51,744,426 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12254,438,476 - 54,443,664 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02222,802,111 - 22,807,652 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12240,887,263 - 40,889,441 (-)NCBIpanpan1.1PanPan1.1panPan2
SHISA8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382241,909,543 - 41,915,074 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2241,909,543 - 41,915,074 (-)EnsemblGRCh38hg38GRCh38
GRCh372242,305,547 - 42,311,078 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362240,635,715 - 40,640,617 (-)NCBINCBI36Build 36hg18NCBI36
Celera2226,112,003 - 26,116,905 (-)NCBICelera
Cytogenetic Map22q13.2NCBI
HuRef2225,271,257 - 25,276,248 (-)NCBIHuRef
CHM1_12242,265,766 - 42,270,869 (-)NCBICHM1_1
T2T-CHM13v2.02242,388,416 - 42,393,946 (-)NCBIT2T-CHM13v2.0
Shisa8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391582,091,153 - 82,097,004 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1582,090,369 - 82,097,016 (-)EnsemblGRCm39 Ensembl
GRCm381582,206,173 - 82,212,848 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1582,206,168 - 82,212,815 (-)EnsemblGRCm38mm10GRCm38
MGSCv371582,037,382 - 82,052,260 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361582,034,207 - 82,049,085 (-)NCBIMGSCv36mm8
Celera1584,330,672 - 84,336,537 (-)NCBICelera
Cytogenetic Map15E1NCBI
Shisa8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87115,602,503 - 115,607,953 (-)NCBIGRCr8
mRatBN7.27113,722,408 - 113,727,858 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7113,722,408 - 113,727,858 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7115,478,377 - 115,483,827 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07117,701,884 - 117,707,334 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07117,671,325 - 117,676,775 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07123,440,163 - 123,445,613 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7123,440,163 - 123,445,613 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07123,423,854 - 123,429,304 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47120,581,770 - 120,595,508 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera7110,037,571 - 110,043,021 (-)NCBICelera
Cytogenetic Map7q34NCBI
Shisa8
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541327,328,632 - 27,330,304 (-)NCBIChiLan1.0ChiLan1.0
SHISA8
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11023,444,051 - 23,448,692 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1023,376,889 - 23,382,774 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01024,187,797 - 24,193,682 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1024,188,891 - 24,193,887 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11023,904,791 - 23,910,675 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01024,226,041 - 24,232,175 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01024,400,174 - 24,406,059 (+)NCBIUU_Cfam_GSD_1.0
Shisa8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049457,098,337 - 7,103,351 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936492108,750 - 113,781 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936492108,751 - 113,765 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SHISA8
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl56,711,336 - 6,717,365 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.156,711,089 - 6,716,644 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SHISA8
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11924,441,962 - 24,447,204 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666045100,964,732 - 100,970,285 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Shisa8
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247526,808,295 - 6,813,216 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247526,808,295 - 6,813,039 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_034948689   ⟹   XP_034804580
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22351,739,276 - 51,744,426 (-)NCBI
NHGRI_mPanPan12254,438,478 - 54,443,664 (-)NCBI
Mhudiblu_PPA_v02222,802,111 - 22,807,652 (-)NCBI
RefSeq Acc Id: XM_034948691   ⟹   XP_034804582
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22351,739,276 - 51,744,426 (-)NCBI
NHGRI_mPanPan12254,438,476 - 54,443,664 (-)NCBI
Mhudiblu_PPA_v02222,802,111 - 22,807,272 (-)NCBI
Protein Sequences
Protein RefSeqs XP_034804580 (Get FASTA)   NCBI Sequence Viewer  
  XP_034804582 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_034804580   ⟸   XM_034948689
- Peptide Label: isoform X1
RefSeq Acc Id: XP_034804582   ⟸   XM_034948691
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
NCBI Gene SHISA8 ENTREZGENE