MAGED2 (MAGE family member D2) - Rat Genome Database

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Gene: MAGED2 (MAGE family member D2) Pan paniscus
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Symbol: MAGED2
Name: MAGE family member D2
RGD ID: 11713043
Description: INVOLVED IN female pregnancy (ortholog); renal sodium ion absorption (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Bartter disease type 5 (ortholog); Dandy-Walker syndrome (ortholog); FOUND IN cytosol (ortholog); nucleolus (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: LOC100976948; melanoma-associated antigen D2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1X55,241,161 - 55,249,577 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX55,241,161 - 55,249,256 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0X47,010,009 - 47,018,370 (+)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (ISO)
nucleolus  (ISO)
nucleoplasm  (ISO)

Molecular Function

References

Genomics

Comparative Map Data
MAGED2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1X55,241,161 - 55,249,577 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX55,241,161 - 55,249,256 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0X47,010,009 - 47,018,370 (+)NCBIMhudiblu_PPA_v0panPan3
MAGED2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 EnsemblX54,807,599 - 54,816,015 (+)EnsemblGRCh38hg38GRCh38
GRCh38X54,807,745 - 54,816,015 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37X54,834,178 - 54,842,448 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X54,850,896 - 54,859,170 (+)NCBINCBI36hg18NCBI36
Build 34X54,718,513 - 54,725,466NCBI
CeleraX58,666,731 - 58,675,005 (+)NCBI
Cytogenetic MapXp11.21NCBI
HuRefX51,883,893 - 51,892,287 (+)NCBIHuRef
CHM1_1X54,824,597 - 54,833,013 (+)NCBICHM1_1
Maged2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X149,589,417 - 149,597,358 (-)NCBIGRCm39mm39
GRCm39 EnsemblX149,589,366 - 149,597,341 (-)Ensembl
GRCm38X150,806,421 - 150,814,362 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX150,806,370 - 150,814,345 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X147,240,964 - 147,248,825 (-)NCBIGRCm37mm9NCBIm37
MGSCv36X146,147,137 - 146,154,998 (-)NCBImm8
CeleraX133,569,891 - 133,573,893 (-)NCBICelera
Cytogenetic MapXF3NCBI
Maged2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X19,733,593 - 19,741,769 (-)NCBI
Rnor_6.0 Ensembl533,174,542 - 33,182,715 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0533,174,539 - 33,182,715 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0537,832,720 - 37,840,896 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X40,056,332 - 40,064,505 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1X40,109,805 - 40,116,420 (-)NCBI
CeleraX19,993,517 - 20,001,690 (-)NCBICelera
Cytogenetic Map5q13NCBI
Maged2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554752,038,189 - 2,046,290 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554752,038,189 - 2,046,240 (-)NCBIChiLan1.0ChiLan1.0
MAGED2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X46,502,459 - 46,510,990 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX46,502,381 - 46,509,436 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX37,893,821 - 37,902,325 (-)NCBI
ROS_Cfam_1.0X50,062,517 - 50,071,011 (-)NCBI
UMICH_Zoey_3.1X46,330,703 - 46,339,207 (+)NCBI
UNSW_CanFamBas_1.0X46,770,546 - 46,779,050 (+)NCBI
Maged2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X39,299,605 - 39,307,769 (+)NCBI
SpeTri2.0NW_0049367511,639,276 - 1,647,494 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MAGED2
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X50,898,166 - 50,906,667 (+)NCBI
ChlSab1.1 EnsemblX50,898,324 - 50,906,260 (+)Ensembl
Maged2
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462491037,155 - 47,711 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000056103   ⟹   ENSPPAP00000033230
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 EnsemblX55,241,161 - 55,249,256 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000056109   ⟹   ENSPPAP00000033236
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 EnsemblX55,242,894 - 55,249,244 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000056113   ⟹   ENSPPAP00000033240
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 EnsemblX55,242,894 - 55,249,244 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000056115   ⟹   ENSPPAP00000033242
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 EnsemblX55,242,894 - 55,249,244 (+)Ensembl
RefSeq Acc Id: XM_008959216   ⟹   XP_008957464
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1X55,241,161 - 55,249,577 (+)NCBI
Mhudiblu_PPA_v0X47,010,009 - 47,018,370 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008959217   ⟹   XP_008957465
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1X55,241,900 - 55,249,577 (+)NCBI
Mhudiblu_PPA_v0X47,010,677 - 47,018,370 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008959218   ⟹   XP_008957466
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1X55,242,622 - 55,249,577 (+)NCBI
Mhudiblu_PPA_v0X47,011,441 - 47,018,370 (+)NCBI
Sequence:
RefSeq Acc Id: XM_034949559   ⟹   XP_034805450
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0X47,010,546 - 47,018,370 (+)NCBI
Protein Sequences
Protein RefSeqs XP_008957464 (Get FASTA)   NCBI Sequence Viewer  
  XP_008957465 (Get FASTA)   NCBI Sequence Viewer  
  XP_008957466 (Get FASTA)   NCBI Sequence Viewer  
  XP_034805450 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_008957464   ⟸   XM_008959216
- Sequence:
RefSeq Acc Id: XP_008957465   ⟸   XM_008959217
- Sequence:
RefSeq Acc Id: XP_008957466   ⟸   XM_008959218
- Sequence:
RefSeq Acc Id: XP_034805450   ⟸   XM_034949559
RefSeq Acc Id: ENSPPAP00000033236   ⟸   ENSPPAT00000056109
RefSeq Acc Id: ENSPPAP00000033230   ⟸   ENSPPAT00000056103
RefSeq Acc Id: ENSPPAP00000033240   ⟸   ENSPPAT00000056113
RefSeq Acc Id: ENSPPAP00000033242   ⟸   ENSPPAT00000056115
Protein Domains
MAGE


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000039467 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000033230 ENTREZGENE, UniProtKB/TrEMBL
  ENSPPAP00000033236 ENTREZGENE, UniProtKB/TrEMBL
  ENSPPAP00000033240 UniProtKB/TrEMBL
  ENSPPAP00000033242 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000056103 UniProtKB/TrEMBL
  ENSPPAT00000056109 UniProtKB/TrEMBL
  ENSPPAT00000056113 UniProtKB/TrEMBL
  ENSPPAT00000056115 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.1200 UniProtKB/TrEMBL
  1.10.10.1210 UniProtKB/TrEMBL
InterPro MAGE UniProtKB/TrEMBL
  MAGE_WH1 UniProtKB/TrEMBL
  MAGE_WH2 UniProtKB/TrEMBL
  MAGED2 UniProtKB/TrEMBL
  MHD_dom UniProtKB/TrEMBL
KEGG Report pps:100976948 UniProtKB/TrEMBL
NCBI Gene LOC100976948 ENTREZGENE
PANTHER PTHR11736 UniProtKB/TrEMBL
  PTHR11736:SF11 UniProtKB/TrEMBL
Pfam MAGE UniProtKB/TrEMBL
PROSITE MAGE UniProtKB/TrEMBL
SMART MAGE UniProtKB/TrEMBL
UniProt A0A2R9BU99_PANPA UniProtKB/TrEMBL
  A0A2R9BUV3_PANPA UniProtKB/TrEMBL
  A0A2R9BXN3_PANPA UniProtKB/TrEMBL
  A0A2R9BXP3_PANPA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-07-01 MAGED2  MAGE family member D2  LOC100976948  melanoma-associated antigen D2  Symbol and/or name change 5135510 APPROVED