NICN1 (nicolin 1) - Rat Genome Database
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Gene: NICN1 (nicolin 1) Pan paniscus
Analyze
Symbol: NICN1
Name: nicolin 1
RGD ID: 11710202
Description: ASSOCIATED WITH autosomal recessive limb-girdle muscular dystrophy type 2P (ortholog); glycine encephalopathy (ortholog); FOUND IN nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: nicolin-1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1350,595,232 - 50,601,612 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl350,595,232 - 50,601,612 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0349,350,753 - 49,357,161 (-)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleoplasm  (ISO)

Molecular Function

References

Genomics

Comparative Map Data
NICN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1350,595,232 - 50,601,612 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl350,595,232 - 50,601,612 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0349,350,753 - 49,357,161 (-)NCBIMhudiblu_PPA_v0panPan3
NICN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl349,422,333 - 49,429,326 (-)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl349,422,946 - 49,429,326 (-)EnsemblGRCh38hg38GRCh38
GRCh38349,422,333 - 49,429,324 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37349,459,766 - 49,466,757 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36349,434,770 - 49,441,761 (-)NCBINCBI36hg18NCBI36
Build 34349,435,383 - 49,441,725NCBI
Celera349,424,553 - 49,431,543 (-)NCBI
Cytogenetic Map3p21.31NCBI
HuRef349,519,494 - 49,526,483 (-)NCBIHuRef
CHM1_1349,412,534 - 49,419,525 (-)NCBICHM1_1
Nicn1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399108,167,642 - 108,173,697 (+)NCBIGRCm39mm39
GRCm39 Ensembl9108,167,628 - 108,173,697 (+)Ensembl
GRCm389108,290,443 - 108,296,498 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9108,290,429 - 108,296,498 (+)EnsemblGRCm38mm10GRCm38
MGSCv379108,192,788 - 108,198,827 (+)NCBIGRCm37mm9NCBIm37
MGSCv369108,148,550 - 108,154,589 (+)NCBImm8
Celera9107,899,500 - 107,905,538 (+)NCBICelera
Cytogenetic Map9F2NCBI
Nicn1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.28108,976,393 - 108,981,620 (+)NCBI
Rnor_6.0 Ensembl8117,062,884 - 117,068,130 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.08117,062,989 - 117,068,134 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.08116,415,763 - 116,420,985 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera8108,279,495 - 108,284,640 (+)NCBICelera
Cytogenetic Map8q32NCBI
Nicn1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555321,358,251 - 1,363,470 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555321,358,251 - 1,363,481 (-)NCBIChiLan1.0ChiLan1.0
NICN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2039,810,692 - 39,814,354 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12039,810,692 - 39,814,354 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Nicn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365291,054,568 - 1,059,575 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NICN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1332,002,658 - 32,007,217 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11332,002,658 - 32,007,266 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
NICN1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12210,821,663 - 10,825,405 (-)NCBI
ChlSab1.1 Ensembl2210,820,757 - 10,825,462 (-)Ensembl
Nicn1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247303,372,456 - 3,377,308 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000035024   ⟹   ENSPPAP00000012359
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl350,595,232 - 50,601,612 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000035030   ⟹   ENSPPAP00000012365
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl350,596,670 - 50,601,603 (-)Ensembl
RefSeq Acc Id: XM_008972270   ⟹   XP_008970518
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1350,595,232 - 50,601,612 (-)NCBI
Mhudiblu_PPA_v0349,350,753 - 49,357,147 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008972272   ⟹   XP_008970520
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1350,596,670 - 50,601,603 (-)NCBI
Mhudiblu_PPA_v0349,351,837 - 49,357,161 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008970518 (Get FASTA)   NCBI Sequence Viewer  
  XP_008970520 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_008970518   ⟸   XM_008972270
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008970520   ⟸   XM_008972272
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSPPAP00000012365   ⟸   ENSPPAT00000035030
RefSeq Acc Id: ENSPPAP00000012359   ⟸   ENSPPAT00000035024


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000029365 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000012359 ENTREZGENE, UniProtKB/TrEMBL
  ENSPPAP00000012365 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000035024 UniProtKB/TrEMBL
  ENSPPAT00000035030 UniProtKB/TrEMBL
InterPro Nicolin-1 UniProtKB/TrEMBL
KEGG Report pps:100989251 UniProtKB/TrEMBL
NCBI Gene NICN1 ENTREZGENE
PANTHER PTHR31239 UniProtKB/TrEMBL
UniProt A0A2R9A4Y5_PANPA UniProtKB/TrEMBL
  A0A2R9A651_PANPA UniProtKB/TrEMBL