OTOS (otospiralin) - Rat Genome Database

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Gene: OTOS (otospiralin) Pan paniscus
Analyze
Symbol: OTOS
Name: otospiralin
RGD ID: 11709854
Description: INVOLVED IN sensory perception of sound (ortholog); ASSOCIATED WITH Bethlem Myopathy 1A (ortholog); chromosome 2q37 deletion syndrome (ortholog); D-2-hydroxyglutaric aciduria 1 (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213142,788,344 - 142,790,287 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B142,803,292 - 142,805,257 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B127,381,936 - 127,383,875 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B246,199,022 - 246,200,862 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B246,199,022 - 246,200,861 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
OTOS
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213142,788,344 - 142,790,287 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B142,803,292 - 142,805,257 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B127,381,936 - 127,383,875 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B246,199,022 - 246,200,862 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B246,199,022 - 246,200,861 (-)Ensemblpanpan1.1panPan2
OTOS
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382240,139,026 - 240,140,658 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2240,139,026 - 240,144,562 (-)EnsemblGRCh38hg38GRCh38
GRCh372241,078,443 - 241,080,075 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362240,727,119 - 240,728,746 (-)NCBINCBI36Build 36hg18NCBI36
Build 342240,798,435 - 240,800,063NCBI
Celera2234,751,484 - 234,753,111 (-)NCBICelera
Cytogenetic Map2q37.3NCBI
HuRef2232,836,361 - 232,837,988 (-)NCBIHuRef
CHM1_12241,084,075 - 241,085,703 (-)NCBICHM1_1
T2T-CHM13v2.02240,631,800 - 240,633,432 (-)NCBIT2T-CHM13v2.0
Otos
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39192,571,940 - 92,576,630 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl192,571,940 - 92,576,563 (-)EnsemblGRCm39 Ensembl
GRCm38192,644,218 - 92,648,899 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl192,644,218 - 92,648,841 (-)EnsemblGRCm38mm10GRCm38
MGSCv37194,540,795 - 94,545,418 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36194,474,624 - 94,479,247 (-)NCBIMGSCv36mm8
Celera195,588,124 - 95,592,747 (-)NCBICelera
Cytogenetic Map1DNCBI
cM Map146.55NCBI
Otos
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr89100,664,378 - 100,667,882 (-)NCBIGRCr8
mRatBN7.2993,216,948 - 93,220,614 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl993,216,948 - 93,218,466 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx9101,652,882 - 101,654,400 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09106,788,652 - 106,790,170 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.09105,144,802 - 105,146,320 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0999,819,578 - 99,824,218 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl999,820,414 - 99,821,954 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0999,485,601 - 99,489,072 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4991,865,264 - 91,866,782 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1992,070,032 - 92,071,551 (-)NCBI
Celera990,753,930 - 90,755,448 (-)NCBICelera
Cytogenetic Map9q36NCBI
Otos
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555421,128,036 - 1,129,445 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555421,128,036 - 1,129,445 (+)NCBIChiLan1.0ChiLan1.0
OTOS
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12550,304,308 - 50,308,209 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2550,304,312 - 50,306,339 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2550,776,239 - 50,778,340 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02550,756,529 - 50,758,603 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2550,756,533 - 50,758,036 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12550,598,270 - 50,600,370 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02550,344,934 - 50,347,030 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02550,622,299 - 50,624,398 (-)NCBIUU_Cfam_GSD_1.0
Otos
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303191,929,078 - 191,930,744 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367451,289,041 - 1,290,077 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367451,287,653 - 1,290,342 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
OTOS
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15139,268,929 - 139,277,541 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115139,268,930 - 139,272,155 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215153,932,806 - 153,941,402 (+)NCBISscrofa10.2Sscrofa10.2susScr3
OTOS
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110126,172,046 - 126,173,975 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl10126,172,191 - 126,173,348 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604073,233,029 - 73,234,932 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Otos
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248474,685,889 - 4,686,813 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008965637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000032047   ⟹   ENSPPAP00000009405
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2B246,199,022 - 246,200,861 (-)Ensembl
RefSeq Acc Id: XM_008965637   ⟹   XP_008963885
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v213142,788,344 - 142,790,287 (-)NCBI
NHGRI_mPanPan12B142,803,292 - 142,805,257 (-)NCBI
Mhudiblu_PPA_v02B127,381,936 - 127,383,875 (-)NCBI
PanPan1.12B246,199,022 - 246,200,862 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008963885 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000009405.1
Reference Protein Sequences
RefSeq Acc Id: XP_008963885   ⟸   XM_008965637
- Sequence:
RefSeq Acc Id: ENSPPAP00000009405   ⟸   ENSPPAT00000032047


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000027930 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000032047.1 UniProtKB/TrEMBL
InterPro Otospiralin UniProtKB/TrEMBL
NCBI Gene OTOS ENTREZGENE
PANTHER OTOSPIRALIN UniProtKB/TrEMBL
  PTHR35073 UniProtKB/TrEMBL
Pfam OTOS UniProtKB/TrEMBL
UniProt A0A2R8ZWQ0_PANPA UniProtKB/TrEMBL