TOR1B (torsin family 1 member B) - Rat Genome Database

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Gene: TOR1B (torsin family 1 member B) Pan paniscus
Analyze
Symbol: TOR1B
Name: torsin family 1 member B
RGD ID: 11709599
Description: ENCODES a protein that exhibits ATP binding (inferred); ATP hydrolysis activity (inferred); identical protein binding (inferred); INVOLVED IN nuclear membrane organization (ortholog); ASSOCIATED WITH genetic disease (ortholog); Human Influenza (ortholog); primary coenzyme Q10 deficiency 7 (ortholog); FOUND IN cytoplasm (inferred); endoplasmic reticulum (inferred); endoplasmic reticulum lumen (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: torsin-1B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2119,537,773 - 9,545,955 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan199,540,114 - 9,548,293 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v09100,930,714 - 100,938,891 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19129,588,325 - 129,596,287 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9129,588,325 - 129,596,287 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
TOR1B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2119,537,773 - 9,545,955 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan199,540,114 - 9,548,293 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v09100,930,714 - 100,938,891 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19129,588,325 - 129,596,287 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9129,588,325 - 129,596,287 (+)Ensemblpanpan1.1panPan2
TOR1B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389129,803,184 - 129,811,281 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9129,803,157 - 129,811,281 (+)EnsemblGRCh38hg38GRCh38
GRCh379132,565,463 - 132,573,560 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369131,605,253 - 131,613,381 (+)NCBINCBI36Build 36hg18NCBI36
Build 349129,644,985 - 129,653,114NCBI
Celera9103,216,467 - 103,224,595 (+)NCBICelera
Cytogenetic Map9q34.11NCBI
HuRef9102,164,317 - 102,172,400 (+)NCBIHuRef
CHM1_19132,714,566 - 132,722,689 (+)NCBICHM1_1
T2T-CHM13v2.09142,007,762 - 142,015,860 (+)NCBIT2T-CHM13v2.0
Tor1b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39230,842,951 - 30,854,085 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl230,842,971 - 30,849,027 (+)EnsemblGRCm39 Ensembl
GRCm38230,952,939 - 30,964,073 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl230,952,959 - 30,959,015 (+)EnsemblGRCm38mm10GRCm38
MGSCv37230,808,521 - 30,814,535 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36230,775,010 - 30,781,024 (+)NCBIMGSCv36mm8
Celera230,658,793 - 30,664,807 (+)NCBICelera
Cytogenetic Map2BNCBI
cM Map221.76NCBI
Tor1b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8334,640,929 - 34,647,023 (+)NCBIGRCr8
mRatBN7.2314,243,181 - 14,249,279 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl314,243,243 - 14,249,272 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx317,315,683 - 17,321,831 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0325,900,678 - 25,906,826 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0324,148,103 - 24,154,130 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.039,792,818 - 9,798,924 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl39,792,899 - 9,798,923 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0315,151,571 - 15,157,596 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4310,018,706 - 10,024,731 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.139,914,044 - 9,918,376 (+)NCBI
Celera39,001,761 - 9,007,786 (+)NCBICelera
Cytogenetic Map3p12NCBI
Tor1b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495551323,118 - 29,401 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495551323,118 - 29,401 (+)NCBIChiLan1.0ChiLan1.0
TOR1B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1954,029,849 - 54,036,032 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl954,030,234 - 54,036,032 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha953,226,718 - 53,232,896 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0954,925,392 - 54,931,565 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl954,925,399 - 54,931,565 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1953,704,406 - 53,710,593 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0954,024,730 - 54,030,620 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0954,118,111 - 54,124,290 (-)NCBIUU_Cfam_GSD_1.0
Tor1b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947197,235,414 - 197,241,536 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648717,004,005 - 17,009,121 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648717,003,941 - 17,011,028 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TOR1B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1269,967,008 - 269,973,693 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11269,966,919 - 269,973,702 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21303,864,134 - 303,870,978 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TOR1B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1128,327,388 - 8,334,019 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl128,327,595 - 8,333,950 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660797,106,539 - 7,113,631 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tor1b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247605,613,974 - 5,620,891 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247605,615,971 - 5,620,790 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000038226   ⟹   ENSPPAP00000015535
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl9129,588,325 - 129,596,287 (+)Ensembl
RefSeq Acc Id: XM_003822364   ⟹   XP_003822412
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2119,537,773 - 9,545,954 (-)NCBI
NHGRI_mPanPan199,540,114 - 9,548,293 (-)NCBI
Mhudiblu_PPA_v09100,930,720 - 100,938,891 (+)NCBI
PanPan1.19129,588,325 - 129,596,287 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003028852
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2119,540,034 - 9,545,948 (-)NCBI
NHGRI_mPanPan199,542,378 - 9,548,286 (-)NCBI
Mhudiblu_PPA_v09100,930,719 - 100,936,623 (+)NCBI
PanPan1.19129,588,325 - 129,593,961 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004664373
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2119,540,034 - 9,545,955 (-)NCBI
NHGRI_mPanPan199,542,378 - 9,548,292 (-)NCBI
Mhudiblu_PPA_v09100,930,714 - 100,936,623 (+)NCBI
RefSeq Acc Id: XR_008626552
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2119,541,724 - 9,545,948 (-)NCBI
NHGRI_mPanPan199,544,068 - 9,548,286 (-)NCBI
Protein Sequences
Protein RefSeqs XP_003822412 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000015535
  ENSPPAP00000015535.1
Reference Protein Sequences
RefSeq Acc Id: XP_003822412   ⟸   XM_003822364
- UniProtKB: A0A2R9ADY2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000015535   ⟸   ENSPPAT00000038226
Protein Domains
Torsin-1A C-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000030907 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000038226.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/TrEMBL
  TOR1A_C UniProtKB/TrEMBL
  Torsin UniProtKB/TrEMBL
  Torsin_1/2 UniProtKB/TrEMBL
KEGG Report pps:100988934 UniProtKB/TrEMBL
NCBI Gene TOR1B ENTREZGENE
PANTHER PTHR10760 UniProtKB/TrEMBL
  PTHR10760:SF14 UniProtKB/TrEMBL
Pfam TOR1A_C UniProtKB/TrEMBL
  Torsin UniProtKB/TrEMBL
PIRSF Torsin_2A UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A2R9ADY2 ENTREZGENE, UniProtKB/TrEMBL