IL17F (interleukin 17F) - Rat Genome Database

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Gene: IL17F (interleukin 17F) Pan paniscus
Analyze
Symbol: IL17F
Name: interleukin 17F
RGD ID: 11709344
Description: ENCODES a protein that exhibits cytokine activity (inferred); cytokine binding (inferred); cytokine receptor binding (inferred); INVOLVED IN positive regulation of cytokine production involved in inflammatory response (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); PARTICIPATES IN interleukin-23 signaling pathway; ASSOCIATED WITH Candidiasis, Familial, 6 (ortholog); FOUND IN extracellular region (inferred); extracellular space (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: interleukin-17F
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1653,057,313 - 53,065,124 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl653,057,318 - 53,065,124 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0651,789,210 - 51,797,470 (-)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
IL17F
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1653,057,313 - 53,065,124 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl653,057,318 - 53,065,124 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0651,789,210 - 51,797,470 (-)NCBIMhudiblu_PPA_v0panPan3
IL17F
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38652,236,681 - 52,245,689 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl652,236,681 - 52,245,689 (-)EnsemblGRCh38hg38GRCh38
GRCh37652,101,479 - 52,109,298 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36652,209,443 - 52,217,257 (-)NCBINCBI36hg18NCBI36
Build 34652,209,442 - 52,217,257NCBI
Celera653,762,606 - 53,770,421 (-)NCBI
Cytogenetic Map6p12.2NCBI
HuRef651,932,711 - 51,940,522 (-)NCBIHuRef
CHM1_1652,103,743 - 52,111,557 (-)NCBICHM1_1
T2T-CHM13v2.0652,075,437 - 52,083,254 (-)NCBI
Il17f
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39120,847,370 - 20,855,498 (-)NCBIGRCm39mm39
GRCm39 Ensembl120,847,370 - 20,860,841 (-)Ensembl
GRCm38120,777,146 - 20,785,274 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl120,777,146 - 20,790,617 (-)EnsemblGRCm38mm10GRCm38
MGSCv37120,767,227 - 20,774,351 (-)NCBIGRCm37mm9NCBIm37
MGSCv36120,762,918 - 20,764,663 (-)NCBImm8
Celera120,651,214 - 20,658,338 (-)NCBICelera
Cytogenetic Map1A4NCBI
Il17f
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2923,190,094 - 23,201,482 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl923,190,100 - 23,201,482 (-)Ensembl
Rnor_6.0926,885,702 - 26,897,219 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl926,885,708 - 26,897,219 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0925,742,088 - 25,753,605 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4919,507,952 - 19,519,338 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1919,505,279 - 19,516,660 (-)NCBI
Celera920,765,976 - 20,777,363 (-)NCBICelera
Cytogenetic Map9q13NCBI
Il17f
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554115,852,767 - 5,859,208 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554115,852,767 - 5,859,208 (+)NCBIChiLan1.0ChiLan1.0
IL17F
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11219,904,283 - 19,908,497 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1219,904,126 - 19,908,619 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1219,801,660 - 19,805,553 (-)NCBI
ROS_Cfam_1.01220,403,156 - 20,407,042 (-)NCBI
UMICH_Zoey_3.11219,909,305 - 19,913,193 (-)NCBI
UNSW_CanFamBas_1.01220,012,473 - 20,016,364 (-)NCBI
UU_Cfam_GSD_1.01220,150,933 - 20,154,815 (-)NCBI
Il17f
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494655,379,286 - 55,380,920 (-)NCBI
SpeTri2.0NW_0049364768,579,282 - 8,580,916 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IL17F
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl746,059,002 - 46,077,048 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1746,058,371 - 46,066,039 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2752,508,706 - 52,516,123 (-)NCBISscrofa10.2Sscrofa10.2susScr3
IL17F
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11720,263,252 - 20,272,234 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1720,264,481 - 20,271,982 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604452,133,830 - 52,147,127 (-)NCBIVero_WHO_p1.0
Il17f
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248553,848,409 - 3,867,175 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046248553,865,559 - 3,867,175 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003833161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide SSBP01000269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000056265   ⟹   ENSPPAP00000033390
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl653,057,318 - 53,065,124 (-)Ensembl
RefSeq Acc Id: XM_003833161   ⟹   XP_003833209
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1653,057,313 - 53,065,124 (-)NCBI
Mhudiblu_PPA_v0651,789,210 - 51,797,470 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003833209 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003833209   ⟸   XM_003833161
- Sequence:
RefSeq Acc Id: ENSPPAP00000033390   ⟸   ENSPPAT00000056265


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000039561 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000033390.1 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000056265.1 UniProtKB/TrEMBL
Gene3D-CATH 2.10.90.10 UniProtKB/TrEMBL
InterPro Cystine-knot_cytokine UniProtKB/TrEMBL
  IL-17_chr UniProtKB/TrEMBL
  IL-17_fam UniProtKB/TrEMBL
KEGG Report pps:100980759 UniProtKB/TrEMBL
NCBI Gene IL17F ENTREZGENE
Pfam IL17 UniProtKB/TrEMBL
PRINTS INTRLEUKIN17 UniProtKB/TrEMBL
Superfamily-SCOP SSF57501 UniProtKB/TrEMBL
UniProt A0A2R9BY33_PANPA UniProtKB/TrEMBL