YIPF2 (Yip1 domain family member 2) - Rat Genome Database

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Gene: YIPF2 (Yip1 domain family member 2) Pan paniscus
Analyze
Symbol: YIPF2
Name: Yip1 domain family member 2
RGD ID: 11707777
Description: ENCODES a protein that exhibits small GTPase binding (inferred); INVOLVED IN vesicle-mediated transport (inferred); ASSOCIATED WITH familial hypercholesterolemia (ortholog); FOUND IN endosome membrane (inferred); Golgi apparatus (inferred); Golgi medial cisterna (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC100968616; uncharacterized LOC100968616
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11911,195,553 - 11,201,409 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1911,195,562 - 11,203,248 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01910,475,806 - 10,482,352 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
YIPF2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11911,195,553 - 11,201,409 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1911,195,562 - 11,203,248 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01910,475,806 - 10,482,352 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
YIPF2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381910,922,193 - 10,928,639 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1910,922,185 - 10,928,681 (-)EnsemblGRCh38hg38GRCh38
GRCh371911,032,869 - 11,039,315 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361910,894,444 - 10,900,357 (-)NCBINCBI36Build 36hg18NCBI36
Celera1910,928,285 - 10,934,198 (-)NCBICelera
Cytogenetic Map19p13.2NCBI
HuRef1910,611,338 - 10,617,251 (-)NCBIHuRef
CHM1_11911,034,607 - 11,040,520 (-)NCBICHM1_1
T2T-CHM13v2.01911,049,204 - 11,055,650 (-)NCBIT2T-CHM13v2.0
Yipf2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39921,499,978 - 21,504,131 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl921,499,978 - 21,504,124 (-)EnsemblGRCm39 Ensembl
GRCm38921,588,682 - 21,592,831 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl921,588,682 - 21,592,828 (-)EnsemblGRCm38mm10GRCm38
MGSCv37921,393,126 - 21,397,190 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36921,339,084 - 21,343,148 (-)NCBIMGSCv36mm8
Celera918,858,302 - 18,862,366 (-)NCBICelera
Cytogenetic Map9A3NCBI
Yipf2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2820,141,148 - 20,145,349 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl820,141,155 - 20,145,339 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx824,173,258 - 24,177,468 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0822,468,810 - 22,473,020 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0820,370,780 - 20,374,981 (-)NCBIRnor_WKY
Rnor_6.0822,621,758 - 22,625,959 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl822,621,782 - 22,625,959 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0822,675,712 - 22,679,913 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4820,694,350 - 20,698,551 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1820,694,359 - 20,698,551 (-)NCBI
Celera821,532,460 - 21,536,661 (-)NCBICelera
Cytogenetic Map8q13NCBI
Yipf2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554951,997,720 - 2,006,264 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554952,001,458 - 2,005,880 (-)NCBIChiLan1.0ChiLan1.0
YIPF2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12050,326,437 - 50,331,038 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2050,325,271 - 50,331,031 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2050,199,791 - 50,204,961 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02050,848,514 - 50,853,681 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2050,847,352 - 50,853,676 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12050,057,866 - 50,063,037 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02050,485,152 - 50,490,324 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02050,726,756 - 50,731,927 (+)NCBIUU_Cfam_GSD_1.0
Yipf2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118209,228,218 - 209,234,338 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366591,120,483 - 1,126,403 (-)EnsemblSpeTri2.0
SpeTri2.0NW_0049366591,120,365 - 1,126,418 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
YIPF2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl269,641,052 - 69,649,824 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1269,644,000 - 69,649,691 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2270,079,512 - 70,084,534 (-)NCBISscrofa10.2Sscrofa10.2susScr3
YIPF2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.169,915,133 - 9,927,917 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl69,916,223 - 9,927,902 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607410,023,539 - 10,029,364 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Yipf2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248282,871,556 - 2,875,503 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248282,871,547 - 2,875,589 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000052595   ⟹   ENSPPAP00000029744
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1911,195,562 - 11,201,409 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000052613   ⟹   ENSPPAP00000029762
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1911,196,169 - 11,203,248 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000052616   ⟹   ENSPPAP00000029765
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1911,196,169 - 11,203,248 (-)Ensembl
RefSeq Acc Id: XM_034946467   ⟹   XP_034802358
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01910,475,806 - 10,482,275 (-)NCBI
RefSeq Acc Id: XM_034946468   ⟹   XP_034802359
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01910,475,806 - 10,482,352 (-)NCBI
RefSeq Acc Id: XM_034946469   ⟹   XP_034802360
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01910,476,670 - 10,482,275 (-)NCBI
RefSeq Acc Id: XM_034946470   ⟹   XP_034802361
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01910,476,670 - 10,482,275 (-)NCBI
Protein Sequences
Protein RefSeqs XP_034802358 (Get FASTA)   NCBI Sequence Viewer  
  XP_034802359 (Get FASTA)   NCBI Sequence Viewer  
  XP_034802360 (Get FASTA)   NCBI Sequence Viewer  
  XP_034802361 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_034802359   ⟸   XM_034946468
- Peptide Label: isoform X1
RefSeq Acc Id: XP_034802358   ⟸   XM_034946467
- Peptide Label: isoform X1
RefSeq Acc Id: XP_034802361   ⟸   XM_034946470
- Peptide Label: isoform X2
RefSeq Acc Id: XP_034802360   ⟸   XM_034946469
- Peptide Label: isoform X1
RefSeq Acc Id: ENSPPAP00000029744   ⟸   ENSPPAT00000052595
RefSeq Acc Id: ENSPPAP00000029762   ⟸   ENSPPAT00000052613
RefSeq Acc Id: ENSPPAP00000029765   ⟸   ENSPPAT00000052616
Protein Domains
Yip1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000037888 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000029744.1 UniProtKB/TrEMBL
  ENSPPAP00000029762.1 UniProtKB/TrEMBL
  ENSPPAP00000029765.1 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000052595.1 UniProtKB/TrEMBL
  ENSPPAT00000052613.1 UniProtKB/TrEMBL
  ENSPPAT00000052616.1 UniProtKB/TrEMBL
InterPro Yip1 UniProtKB/TrEMBL
  Yip5/YIPF1/YIPF2 UniProtKB/TrEMBL
NCBI Gene YIPF2 ENTREZGENE
PANTHER PTHR12822 UniProtKB/TrEMBL
Pfam Yip1 UniProtKB/TrEMBL
UniProt A0A2R9BJA4_PANPA UniProtKB/TrEMBL
  A0A2R9BJB0_PANPA UniProtKB/TrEMBL
  A0A2R9BMW6_PANPA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-06-11 YIPF2  Yip1 domain family member 2  LOC100968616  uncharacterized LOC100968616  Data Merged 737654 PROVISIONAL