CLDN1 (claudin 1) - Rat Genome Database
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Gene: CLDN1 (claudin 1) Pan paniscus
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Symbol: CLDN1
Name: claudin 1
RGD ID: 11707452
Description: ENCODES a protein that exhibits identical protein binding (ortholog); virus receptor activity (ortholog); INVOLVED IN aging (ortholog); bicellular tight junction assembly (ortholog); calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules (ortholog); ASSOCIATED WITH atopic dermatitis (ortholog); Breast Neoplasms (ortholog); Burns (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); bicellular tight junction (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: claudin-1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.13195,882,239 - 195,898,990 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3195,882,239 - 195,899,248 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v03187,328,629 - 187,345,360 (-)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Genomics

Comparative Map Data
CLDN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.13195,882,239 - 195,898,990 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3195,882,239 - 195,899,248 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v03187,328,629 - 187,345,360 (-)NCBIMhudiblu_PPA_v0panPan3
CLDN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl3190,305,707 - 190,322,446 (-)EnsemblGRCh38hg38GRCh38
GRCh383190,305,707 - 190,322,446 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh373190,023,496 - 190,040,235 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363191,506,187 - 191,522,909 (-)NCBINCBI36hg18NCBI36
Build 343191,506,195 - 191,522,917NCBI
Celera3188,453,968 - 188,470,713 (-)NCBI
Cytogenetic Map3q28NCBI
HuRef3187,423,222 - 187,439,968 (-)NCBIHuRef
CHM1_13189,986,455 - 190,003,201 (-)NCBICHM1_1
Cldn1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391626,175,395 - 26,190,589 (-)NCBIGRCm39mm39
GRCm39 Ensembl1626,175,392 - 26,190,591 (-)Ensembl
GRCm381626,356,645 - 26,371,839 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1626,356,642 - 26,371,841 (-)EnsemblGRCm38mm10GRCm38
MGSCv371626,356,737 - 26,371,925 (-)NCBIGRCm37mm9NCBIm37
MGSCv361626,272,000 - 26,287,188 (-)NCBImm8
Celera1626,899,939 - 26,915,115 (-)NCBICelera
Cytogenetic Map16B2NCBI
Cldn1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21174,421,569 - 74,436,728 (+)NCBI
Rnor_6.0 Ensembl1177,815,181 - 77,830,416 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01177,815,216 - 77,830,373 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01182,888,890 - 82,904,926 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41176,473,654 - 76,488,809 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11176,531,242 - 76,546,394 (+)NCBI
Celera1173,332,294 - 73,347,451 (+)NCBICelera
Cytogenetic Map11q22NCBI
Cldn1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542017,798,974 - 17,815,205 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542017,798,974 - 17,815,049 (+)NCBIChiLan1.0ChiLan1.0
CLDN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl3422,303,850 - 22,319,033 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.13422,303,058 - 22,319,101 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Cldn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493657898,489 - 113,125 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLDN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13127,712,767 - 127,730,657 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113127,714,857 - 127,730,628 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213136,971,674 - 136,987,446 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CLDN1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11584,518,464 - 84,533,587 (-)NCBI
ChlSab1.1 Ensembl1584,516,478 - 84,532,969 (-)Ensembl
Cldn1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473066,885,674 - 66,902,345 (+)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003824966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide SSBP01000187 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000046256   ⟹   ENSPPAP00000023432
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl3195,882,239 - 195,899,248 (-)Ensembl
RefSeq Acc Id: XM_003824966   ⟹   XP_003825014
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.13195,882,239 - 195,898,990 (-)NCBI
Mhudiblu_PPA_v03187,328,629 - 187,345,360 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003825014 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003825014   ⟸   XM_003824966
- Sequence:
RefSeq Acc Id: ENSPPAP00000023432   ⟸   ENSPPAT00000046256


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000034892 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000023432 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000046256 UniProtKB/TrEMBL
InterPro Claudin UniProtKB/TrEMBL
  Claudin1 UniProtKB/TrEMBL
  Claudin_CS UniProtKB/TrEMBL
  PMP22/EMP/MP20/Claudin UniProtKB/TrEMBL
KEGG Report pps:100989749 UniProtKB/TrEMBL
NCBI Gene CLDN1 ENTREZGENE
PANTHER PTHR12002 UniProtKB/TrEMBL
  PTHR12002:SF92 UniProtKB/TrEMBL
Pfam PMP22_Claudin UniProtKB/TrEMBL
PRINTS CLAUDIN1 UniProtKB/TrEMBL
PROSITE CLAUDIN UniProtKB/TrEMBL
UniProt A0A2R9B835_PANPA UniProtKB/TrEMBL