LOC100967331 (ubiquitin carboxyl-terminal hydrolase 4) - Rat Genome Database
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Gene: LOC100967331 (ubiquitin carboxyl-terminal hydrolase 4) Pan paniscus
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Symbol: LOC100967331
Name: ubiquitin carboxyl-terminal hydrolase 4
RGD ID: 11705520
Description: ENCODES a protein that exhibits adenosine receptor binding (ortholog); identical protein binding (ortholog); thiol-dependent deubiquitinase (ortholog); INVOLVED IN negative regulation of protein ubiquitination (ortholog); protein deubiquitination (ortholog); protein localization to cell surface (ortholog); ASSOCIATED WITH autosomal recessive limb-girdle muscular dystrophy type 2P (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: Sjoegren syndrome nuclear autoantigen 1 homolog; ubiquitin specific peptidase 4; USP4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1350,279,642 - 50,343,901 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl350,279,642 - 50,343,903 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0349,199,328 - 49,263,861 (-)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)
cytosol  (ISO)
nucleus  (ISO)
plasma membrane  (ISO)

Molecular Function

References

Genomics

Comparative Map Data
LOC100967331
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1350,279,642 - 50,343,901 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl350,279,642 - 50,343,903 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0349,199,328 - 49,263,861 (-)NCBIMhudiblu_PPA_v0panPan3
USP4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl349,277,144 - 49,340,712 (-)EnsemblGRCh38hg38GRCh38
GRCh38349,277,144 - 49,340,053 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37349,314,577 - 49,377,486 (-)NCBIGRCh37GRCh37hg19GRCh37
GRCh37349,314,577 - 49,377,536 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36349,289,997 - 49,352,519 (-)NCBINCBI36hg18NCBI36
Build 34349,289,997 - 49,352,519NCBI
Celera349,278,021 - 49,342,350 (-)NCBI
Cytogenetic Map3p21.31NCBI
HuRef349,371,896 - 49,436,532 (-)NCBIHuRef
CHM1_1349,267,379 - 49,330,367 (-)NCBICHM1_1
Usp4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399108,223,763 - 108,269,744 (+)NCBIGRCm39mm39
GRCm389108,346,564 - 108,392,545 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9108,347,853 - 108,392,545 (+)EnsemblGRCm38mm10GRCm38
MGSCv379108,250,162 - 108,294,860 (+)NCBIGRCm37mm9NCBIm37
MGSCv369108,205,963 - 108,250,621 (+)NCBImm8
Celera9107,957,048 - 108,001,736 (+)NCBICelera
Cytogenetic Map9F2NCBI
cM Map959.25NCBI
Usp4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.28109,035,402 - 109,080,427 (+)NCBI
Rnor_6.0 Ensembl8117,126,692 - 117,171,012 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.08117,126,692 - 117,171,012 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.08116,474,812 - 116,519,375 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera8108,338,833 - 108,383,118 (+)NCBICelera
Cytogenetic Map8q32NCBI
Usp4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555321,247,110 - 1,285,121 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555321,247,110 - 1,284,564 (-)NCBIChiLan1.0ChiLan1.0
USP4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2039,899,897 - 39,952,420 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12039,899,880 - 39,952,959 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Usp4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936529941,042 - 989,781 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
USP4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1331,840,300 - 31,904,348 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11331,844,780 - 31,904,418 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21335,075,799 - 35,135,425 (-)NCBISscrofa10.2Sscrofa10.2susScr3
USP4
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12210,672,920 - 10,735,374 (-)NCBI
ChlSab1.1 Ensembl2210,672,388 - 10,732,104 (-)Ensembl
Usp4
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247303,252,980 - 3,306,439 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000037594   ⟹   ENSPPAP00000014906
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl350,279,642 - 50,343,887 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000037600   ⟹   ENSPPAP00000014912
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl350,279,642 - 50,343,886 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000037605   ⟹   ENSPPAP00000014917
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl350,280,377 - 50,343,718 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000037609   ⟹   ENSPPAP00000014921
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl350,315,992 - 50,343,718 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000037615   ⟹   ENSPPAP00000014927
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl350,320,448 - 50,343,903 (-)Ensembl
RefSeq Acc Id: XM_003818371   ⟹   XP_003818419
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1350,279,642 - 50,343,884 (-)NCBI
Mhudiblu_PPA_v0349,199,328 - 49,263,296 (-)NCBI
Sequence:
RefSeq Acc Id: XM_003818372   ⟹   XP_003818420
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1350,279,642 - 50,343,883 (-)NCBI
Mhudiblu_PPA_v0349,199,328 - 49,263,295 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008971660   ⟹   XP_008969908
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1350,279,714 - 50,343,885 (-)NCBI
Mhudiblu_PPA_v0349,200,209 - 49,263,301 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008971661   ⟹   XP_008969909
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1350,320,444 - 50,343,901 (-)NCBI
Mhudiblu_PPA_v0349,239,873 - 49,263,861 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034956452   ⟹   XP_034812343
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0349,199,523 - 49,263,298 (-)NCBI
RefSeq Acc Id: XM_034956453   ⟹   XP_034812344
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0349,199,523 - 49,263,297 (-)NCBI
RefSeq Acc Id: XM_034956454   ⟹   XP_034812345
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0349,235,002 - 49,263,857 (-)NCBI
RefSeq Acc Id: XM_034956455   ⟹   XP_034812346
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0349,239,873 - 49,241,931 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_003818419   ⟸   XM_003818371
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_003818420   ⟸   XM_003818372
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_008969908   ⟸   XM_008971660
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_008969909   ⟸   XM_008971661
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_034812343   ⟸   XM_034956452
- Peptide Label: isoform X3
RefSeq Acc Id: XP_034812344   ⟸   XM_034956453
- Peptide Label: isoform X4
RefSeq Acc Id: XP_034812345   ⟸   XM_034956454
- Peptide Label: isoform X7
RefSeq Acc Id: XP_034812346   ⟸   XM_034956455
- Peptide Label: isoform X8
RefSeq Acc Id: ENSPPAP00000014906   ⟸   ENSPPAT00000037594
RefSeq Acc Id: ENSPPAP00000014927   ⟸   ENSPPAT00000037615
RefSeq Acc Id: ENSPPAP00000014921   ⟸   ENSPPAT00000037609
RefSeq Acc Id: ENSPPAP00000014917   ⟸   ENSPPAT00000037605
RefSeq Acc Id: ENSPPAP00000014912   ⟸   ENSPPAT00000037600
Protein Domains
DUSP   USP


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000030591 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000014906 ENTREZGENE, UniProtKB/TrEMBL
  ENSPPAP00000014912 ENTREZGENE, UniProtKB/TrEMBL
  ENSPPAP00000014917 UniProtKB/TrEMBL
  ENSPPAP00000014921 UniProtKB/TrEMBL
  ENSPPAP00000014927 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000037594 UniProtKB/TrEMBL
  ENSPPAT00000037600 UniProtKB/TrEMBL
  ENSPPAT00000037605 UniProtKB/TrEMBL
  ENSPPAT00000037609 UniProtKB/TrEMBL
  ENSPPAT00000037615 UniProtKB/TrEMBL
InterPro DUSP-like_sf UniProtKB/TrEMBL
  Papain_like_cys_pep_sf UniProtKB/TrEMBL
  Pept_C19_DUSP UniProtKB/TrEMBL
  Peptidase_C19_UCH UniProtKB/TrEMBL
  Ub_USP-typ UniProtKB/TrEMBL
  USP_CS UniProtKB/TrEMBL
  USP_dom UniProtKB/TrEMBL
KEGG Report pps:100967331 UniProtKB/TrEMBL
NCBI Gene USP4 ENTREZGENE
Pfam DUSP UniProtKB/TrEMBL
  Ubiquitin_3 UniProtKB/TrEMBL
  UCH UniProtKB/TrEMBL
PROSITE DUSP UniProtKB/TrEMBL
  USP_1 UniProtKB/TrEMBL
  USP_2 UniProtKB/TrEMBL
  USP_3 UniProtKB/TrEMBL
SMART DUSP UniProtKB/TrEMBL
Superfamily-SCOP SSF143791 UniProtKB/TrEMBL
  SSF54001 UniProtKB/TrEMBL
UniProt A0A2R9ADB3_PANPA UniProtKB/TrEMBL
  A0A2R9ADC8_PANPA UniProtKB/TrEMBL
  A0A2R9AIA7_PANPA UniProtKB/TrEMBL
  A0A2R9AIB1_PANPA UniProtKB/TrEMBL
  A0A2R9AIC2_PANPA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-07-01 LOC100967331  ubiquitin carboxyl-terminal hydrolase 4  USP4  ubiquitin specific peptidase 4  Symbol and/or name change 5135510 APPROVED