DCAF17 (DDB1 and CUL4 associated factor 17) - Rat Genome Database

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Gene: DCAF17 (DDB1 and CUL4 associated factor 17) Pan paniscus
Analyze
Symbol: DCAF17
Name: DDB1 and CUL4 associated factor 17
RGD ID: 11704956
Description: INVOLVED IN acrosome assembly (ortholog); cell morphogenesis (ortholog); spermatogenesis (ortholog); ASSOCIATED WITH Alopecia, Hypogonadism, Extrapyramidal Disorder (ortholog); genetic disease (ortholog); neurodegeneration with brain iron accumulation (ortholog); FOUND IN Cul4-RING E3 ubiquitin ligase complex (inferred); cytosol (inferred); nucleoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: DDB1- and CUL4-associated factor 17
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21374,113,289 - 74,164,109 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B74,128,262 - 74,179,082 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B58,725,392 - 58,776,238 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B176,183,963 - 176,234,825 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B176,184,348 - 176,234,825 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
DCAF17
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21374,113,289 - 74,164,109 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B74,128,262 - 74,179,082 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B58,725,392 - 58,776,238 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B176,183,963 - 176,234,825 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B176,184,348 - 176,234,825 (+)Ensemblpanpan1.1panPan2
DCAF17
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382171,434,226 - 171,485,052 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2171,434,217 - 171,485,052 (+)EnsemblGRCh38hg38GRCh38
GRCh372172,290,736 - 172,341,562 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362171,999,105 - 172,049,808 (+)NCBINCBI36Build 36hg18NCBI36
Celera2165,907,349 - 165,958,150 (+)NCBICelera
Cytogenetic Map2q31.1NCBI
HuRef2164,176,253 - 164,227,023 (+)NCBIHuRef
CHM1_12172,297,542 - 172,348,338 (+)NCBICHM1_1
T2T-CHM13v2.02171,911,366 - 171,962,182 (+)NCBIT2T-CHM13v2.0
Dcaf17
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39270,886,086 - 70,946,796 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl270,885,672 - 70,929,486 (+)EnsemblGRCm39 Ensembl
GRCm38271,055,742 - 71,116,412 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl271,055,328 - 71,099,142 (+)EnsemblGRCm38mm10GRCm38
MGSCv37270,893,801 - 70,937,199 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36270,856,691 - 70,889,483 (+)NCBIMGSCv36mm8
Celera272,724,424 - 72,763,482 (+)NCBICelera
Cytogenetic Map2C2NCBI
cM Map242.38NCBI
Dcaf17
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8376,271,503 - 76,303,321 (+)NCBIGRCr8
mRatBN7.2355,863,776 - 55,895,601 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl355,863,799 - 55,891,820 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx359,261,818 - 59,293,457 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0367,845,387 - 67,877,032 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0365,607,633 - 65,639,102 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0357,646,799 - 57,678,802 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl357,646,811 - 57,673,418 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0364,142,519 - 64,174,461 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4353,310,544 - 53,336,761 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera355,411,964 - 55,436,830 (+)NCBICelera
Cytogenetic Map3q22NCBI
Dcaf17
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554493,428,888 - 3,458,377 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554493,428,311 - 3,458,723 (-)NCBIChiLan1.0ChiLan1.0
DCAF17
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13615,906,013 - 15,961,318 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3615,905,085 - 15,938,910 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3615,916,018 - 15,971,351 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03616,028,948 - 16,084,543 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3616,028,932 - 16,061,492 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13616,114,642 - 16,170,201 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03616,114,447 - 16,170,005 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03616,217,139 - 16,272,033 (+)NCBIUU_Cfam_GSD_1.0
Dcaf17
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303133,124,803 - 133,164,396 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365091,678,988 - 1,720,418 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365091,678,831 - 1,716,856 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DCAF17
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1577,564,646 - 77,603,620 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11577,564,629 - 77,603,913 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21586,947,903 - 86,983,620 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DCAF17
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11056,951,181 - 56,998,540 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1056,951,351 - 56,997,487 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040142,537,905 - 142,594,954 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dcaf17
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247878,857,462 - 8,898,628 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247878,858,001 - 8,898,481 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000059377   ⟹   ENSPPAP00000036485
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2B176,184,348 - 176,230,902 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000059378   ⟹   ENSPPAP00000036486
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2B176,184,348 - 176,230,902 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000059385   ⟹   ENSPPAP00000036493
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2B176,184,505 - 176,234,825 (+)Ensembl
RefSeq Acc Id: XM_014344012   ⟹   XP_014199498
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21374,113,296 - 74,164,109 (+)NCBI
NHGRI_mPanPan12B74,128,269 - 74,179,082 (+)NCBI
Mhudiblu_PPA_v02B58,725,392 - 58,776,230 (+)NCBI
PanPan1.12B176,183,963 - 176,234,825 (+)NCBI
Sequence:
RefSeq Acc Id: XM_024928023   ⟹   XP_024783791
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21374,114,041 - 74,164,109 (+)NCBI
NHGRI_mPanPan12B74,129,014 - 74,179,082 (+)NCBI
Mhudiblu_PPA_v02B58,726,075 - 58,776,230 (+)NCBI
PanPan1.12B176,184,446 - 176,234,825 (+)NCBI
Sequence:
RefSeq Acc Id: XM_034954482   ⟹   XP_034810373
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21374,113,289 - 74,164,109 (+)NCBI
NHGRI_mPanPan12B74,128,262 - 74,179,082 (+)NCBI
Mhudiblu_PPA_v02B58,725,442 - 58,776,236 (+)NCBI
RefSeq Acc Id: XM_034954483   ⟹   XP_034810374
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21374,113,306 - 74,164,109 (+)NCBI
NHGRI_mPanPan12B74,128,279 - 74,179,082 (+)NCBI
Mhudiblu_PPA_v02B58,725,452 - 58,776,238 (+)NCBI
RefSeq Acc Id: XP_014199498   ⟸   XM_014344012
- Peptide Label: isoform X3
- UniProtKB: A0A2R9C3H5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_024783791   ⟸   XM_024928023
- Peptide Label: isoform X3
- UniProtKB: A0A2R9C3H5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_034810373   ⟸   XM_034954482
- Peptide Label: isoform X1
- UniProtKB: A0A2R9C3H5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034810374   ⟸   XM_034954483
- Peptide Label: isoform X2
- UniProtKB: A0A2R9C3D8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSPPAP00000036485   ⟸   ENSPPAT00000059377
Ensembl Acc Id: ENSPPAP00000036486   ⟸   ENSPPAT00000059378
Ensembl Acc Id: ENSPPAP00000036493   ⟸   ENSPPAT00000059385


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000040993 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000059377.1 UniProtKB/TrEMBL
  ENSPPAT00000059378.1 UniProtKB/TrEMBL
  ENSPPAT00000059385.1 UniProtKB/TrEMBL
InterPro DCAF17 UniProtKB/TrEMBL
NCBI Gene DCAF17 ENTREZGENE
PANTHER DDB1- AND CUL4-ASSOCIATED FACTOR 17 UniProtKB/TrEMBL
  PTHR14815 UniProtKB/TrEMBL
Pfam DCAF17 UniProtKB/TrEMBL
UniProt A0A2R9C3D8 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9C3H5 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9C6H3_PANPA UniProtKB/TrEMBL