CDC73 (cell division cycle 73) - Rat Genome Database

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Gene: CDC73 (cell division cycle 73) Pan paniscus
Analyze
Symbol: CDC73
Name: cell division cycle 73
RGD ID: 11702817
Description: ENCODES a protein that exhibits RNA polymerase II complex binding (inferred); INVOLVED IN cellular response to lipopolysaccharide (inferred); endodermal cell fate commitment (inferred); mRNA 3'-end processing (inferred); PARTICIPATES IN RNA polymerase I transcription pathway; RNA polymerase II transcription elongation pathway; ASSOCIATED WITH breast cancer (ortholog); Breast Cancer, Familial (ortholog); colorectal cancer (ortholog); FOUND IN Cdc73/Paf1 complex (inferred); cytosol (inferred); nucleoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cell division cycle 73, Paf1/RNA polymerase II complex component, homolog; parafibromin
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2156,534,616 - 56,670,750 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1156,190,589 - 56,334,645 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01168,581,730 - 168,710,915 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11172,875,365 - 173,004,942 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1172,875,365 - 173,004,934 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
CDC73
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2156,534,616 - 56,670,750 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1156,190,589 - 56,334,645 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01168,581,730 - 168,710,915 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11172,875,365 - 173,004,942 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1172,875,365 - 173,004,934 (+)Ensemblpanpan1.1panPan2
CDC73
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381193,122,031 - 193,254,815 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1193,121,983 - 193,254,815 (+)EnsemblGRCh38hg38GRCh38
GRCh371193,091,161 - 193,223,945 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361191,357,784 - 191,487,679 (+)NCBINCBI36Build 36hg18NCBI36
Build 341189,822,817 - 189,952,713NCBI
Celera1166,200,694 - 166,333,560 (+)NCBICelera
Cytogenetic Map1q31.2NCBI
HuRef1164,326,911 - 164,459,852 (+)NCBIHuRef
CHM1_11194,512,977 - 194,645,669 (+)NCBICHM1_1
T2T-CHM13v2.01192,469,240 - 192,602,060 (+)NCBIT2T-CHM13v2.0
Cdc73
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391143,479,014 - 143,578,631 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1143,474,538 - 143,578,631 (-)EnsemblGRCm39 Ensembl
GRCm381143,603,276 - 143,702,893 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1143,598,800 - 143,702,893 (-)EnsemblGRCm38mm10GRCm38
MGSCv371145,454,629 - 145,549,814 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361145,369,717 - 145,464,902 (-)NCBIMGSCv36mm8
Celera1146,186,403 - 146,281,769 (-)NCBICelera
Cytogenetic Map1FNCBI
cM Map162.52NCBI
Cdc73
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81357,897,924 - 58,000,031 (-)NCBIGRCr8
mRatBN7.21355,357,226 - 55,449,690 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1355,357,226 - 55,449,656 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1357,920,582 - 58,012,922 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01359,192,881 - 59,285,299 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01356,477,724 - 56,570,082 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01360,403,771 - 60,496,511 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1360,403,771 - 60,496,511 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01365,392,579 - 65,485,175 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41357,441,674 - 57,534,385 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11357,455,753 - 57,548,465 (-)NCBI
Celera1355,444,707 - 55,537,113 (-)NCBICelera
Cytogenetic Map13q21NCBI
Cdc73
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540630,533,060 - 30,665,812 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540630,533,919 - 30,665,812 (+)NCBIChiLan1.0ChiLan1.0
CDC73
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1385,826,209 - 5,937,930 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl385,805,916 - 5,938,111 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha385,923,156 - 6,034,975 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0385,842,156 - 5,954,484 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl385,841,856 - 5,954,492 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1385,841,710 - 5,953,973 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0386,206,980 - 6,319,388 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0386,435,831 - 6,547,946 (-)NCBIUU_Cfam_GSD_1.0
Cdc73
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934480,662,470 - 80,779,375 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366381,365,648 - 1,483,277 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366381,365,457 - 1,482,497 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDC73
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl10575,075 - 667,432 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.110575,075 - 667,618 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2102,279,054 - 2,305,137 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CDC73
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12536,167,482 - 36,302,918 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2536,170,134 - 36,302,812 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605537,127,006 - 37,251,142 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cdc73
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624814299,444 - 460,391 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624814298,015 - 460,314 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003820601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSPPAT00000045626   ⟹   ENSPPAP00000022812
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1172,875,365 - 173,004,934 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000045633   ⟹   ENSPPAP00000022819
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1172,875,761 - 173,001,755 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000045638   ⟹   ENSPPAP00000022825
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1172,875,761 - 173,001,755 (+)Ensembl
RefSeq Acc Id: XM_003820601   ⟹   XP_003820649
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2156,534,616 - 56,670,750 (-)NCBI
NHGRI_mPanPan1156,190,589 - 56,334,645 (-)NCBI
Mhudiblu_PPA_v01168,581,730 - 168,710,915 (+)NCBI
PanPan1.11172,875,365 - 173,004,942 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003820649 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000022812.1
  ENSPPAP00000022819.1
  ENSPPAP00000022825.1
RefSeq Acc Id: XP_003820649   ⟸   XM_003820601
- UniProtKB: A0A2R9B3T2 (UniProtKB/TrEMBL),   A0A2R9AZR6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSPPAP00000022812   ⟸   ENSPPAT00000045626
Ensembl Acc Id: ENSPPAP00000022819   ⟸   ENSPPAT00000045633
Ensembl Acc Id: ENSPPAP00000022825   ⟸   ENSPPAT00000045638

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000034455 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000045626.1 UniProtKB/TrEMBL
  ENSPPAT00000045633.1 UniProtKB/TrEMBL
  ENSPPAT00000045638.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.11990 UniProtKB/TrEMBL
InterPro Cdc73/Parafibromin UniProtKB/TrEMBL
  CDC73_C UniProtKB/TrEMBL
  CDC73_C_sf UniProtKB/TrEMBL
  Cdc73_N UniProtKB/TrEMBL
KEGG Report pps:100969187 UniProtKB/TrEMBL
NCBI Gene CDC73 ENTREZGENE
PANTHER PARAFIBROMIN UniProtKB/TrEMBL
  PTHR12466 UniProtKB/TrEMBL
Pfam CDC73_C UniProtKB/TrEMBL
  CDC73_N UniProtKB/TrEMBL
UniProt A0A2R9AZR6 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9AZZ7_PANPA UniProtKB/TrEMBL
  A0A2R9B3T2 ENTREZGENE, UniProtKB/TrEMBL