SLC30A3 (solute carrier family 30 member 3) - Rat Genome Database

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Gene: SLC30A3 (solute carrier family 30 member 3) Pan paniscus
Analyze
Symbol: SLC30A3
Name: solute carrier family 30 member 3
RGD ID: 11701157
Description: ENCODES a protein that exhibits antiporter activity (inferred); monoatomic cation transmembrane transporter activity (inferred); zinc ion transmembrane transporter activity (inferred); INVOLVED IN positive regulation of transport (ortholog); ASSOCIATED WITH Febrile Seizures (ortholog); genetic disease (ortholog); Tatton-Brown-Rahman syndrome (ortholog); FOUND IN glutamatergic synapse (ortholog); hippocampal mossy fiber to CA3 synapse (ortholog); microvesicle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: probable proton-coupled zinc antiporter SLC30A3; zinc transporter 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21299,237,770 - 99,258,569 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A99,241,738 - 99,262,537 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A27,255,944 - 27,276,720 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A27,344,045 - 27,364,820 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A27,344,045 - 27,353,543 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
SLC30A3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21299,237,770 - 99,258,569 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A99,241,738 - 99,262,537 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A27,255,944 - 27,276,720 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A27,344,045 - 27,364,820 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A27,344,045 - 27,353,543 (-)Ensemblpanpan1.1panPan2
SLC30A3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38227,253,684 - 27,275,817 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl227,253,684 - 27,275,817 (-)EnsemblGRCh38hg38GRCh38
GRCh37227,476,552 - 27,498,685 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36227,330,944 - 27,339,464 (-)NCBINCBI36Build 36hg18NCBI36
Build 34227,389,091 - 27,397,611NCBI
Celera227,323,767 - 27,332,284 (-)NCBICelera
Cytogenetic Map2p23.3NCBI
HuRef227,219,146 - 27,227,667 (-)NCBIHuRef
CHM1_1227,407,345 - 27,415,865 (-)NCBICHM1_1
T2T-CHM13v2.0227,295,330 - 27,317,459 (-)NCBIT2T-CHM13v2.0
Slc30a3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39531,243,450 - 31,265,576 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl531,243,450 - 31,265,581 (-)EnsemblGRCm39 Ensembl
GRCm38531,086,106 - 31,108,244 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl531,086,106 - 31,108,237 (-)EnsemblGRCm38mm10GRCm38
MGSCv37531,388,479 - 31,395,900 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36531,364,530 - 31,370,079 (-)NCBIMGSCv36mm8
Celera528,564,559 - 28,571,976 (-)NCBICelera
Cytogenetic Map5B1NCBI
cM Map516.97NCBI
Slc30a3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8630,984,241 - 31,004,689 (+)NCBIGRCr8
mRatBN7.2625,264,310 - 25,284,720 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl625,275,528 - 25,284,720 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx625,578,283 - 25,585,330 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0625,894,141 - 25,901,188 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0625,373,121 - 25,380,171 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0626,629,752 - 26,650,106 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl626,642,783 - 26,650,105 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0636,457,851 - 36,464,874 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4625,257,765 - 25,264,794 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1625,260,717 - 25,267,747 (+)NCBI
Celera624,768,548 - 24,775,600 (+)NCBICelera
Cytogenetic Map6q14NCBI
Slc30a3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554699,235,104 - 9,254,964 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554699,235,159 - 9,254,291 (-)NCBIChiLan1.0ChiLan1.0
SLC30A3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11721,230,918 - 21,239,598 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1721,231,611 - 21,239,564 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1721,122,730 - 21,131,394 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01721,551,935 - 21,560,599 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1721,551,943 - 21,560,605 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11721,238,677 - 21,247,341 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01721,249,720 - 21,258,379 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01721,296,622 - 21,305,293 (-)NCBIUU_Cfam_GSD_1.0
Slc30a3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629265,536,696 - 65,555,742 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364935,293,822 - 5,304,029 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364935,292,278 - 5,302,862 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC30A3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3111,870,681 - 111,879,324 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13111,870,803 - 111,878,234 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SLC30A3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11480,348,513 - 80,360,339 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1480,355,127 - 80,361,544 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604531,794,087 - 31,804,626 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc30a3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247389,348,303 - 9,356,908 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247389,348,600 - 9,356,852 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSPPAT00000034727   ⟹   ENSPPAP00000012065
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2A27,344,045 - 27,352,707 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000034730   ⟹   ENSPPAP00000012068
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2A27,344,556 - 27,353,543 (-)Ensembl
RefSeq Acc Id: XM_003827100   ⟹   XP_003827148
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21299,250,042 - 99,258,569 (+)NCBI
NHGRI_mPanPan12A99,254,011 - 99,262,537 (+)NCBI
Mhudiblu_PPA_v02A27,255,944 - 27,264,469 (-)NCBI
PanPan1.12A27,344,045 - 27,352,707 (-)NCBI
Sequence:
RefSeq Acc Id: XM_003827101   ⟹   XP_003827149
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21299,237,770 - 99,258,569 (+)NCBI
NHGRI_mPanPan12A99,241,738 - 99,262,537 (+)NCBI
Mhudiblu_PPA_v02A27,255,944 - 27,276,720 (-)NCBI
PanPan1.12A27,344,045 - 27,364,820 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003827148 (Get FASTA)   NCBI Sequence Viewer  
  XP_003827149 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000012065.1
  ENSPPAP00000012068
  ENSPPAP00000012068.1
RefSeq Acc Id: XP_003827148   ⟸   XM_003827100
- Peptide Label: isoform X1
- UniProtKB: A0A2R9A8U6 (UniProtKB/TrEMBL),   A0A2R9A447 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003827149   ⟸   XM_003827101
- Peptide Label: isoform X2
- UniProtKB: A0A2R9A447 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000012068   ⟸   ENSPPAT00000034730
RefSeq Acc Id: ENSPPAP00000012065   ⟸   ENSPPAT00000034727


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000029219 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000034727.1 UniProtKB/TrEMBL
  ENSPPAT00000034730.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1510.10 UniProtKB/TrEMBL
InterPro Cation_efflux UniProtKB/TrEMBL
  Cation_efflux_CTD_sf UniProtKB/TrEMBL
  Cation_efflux_TMD_sf UniProtKB/TrEMBL
NCBI Gene SLC30A3 ENTREZGENE
PANTHER CATION EFFLUX PROTEIN/ ZINC TRANSPORTER UniProtKB/TrEMBL
  ZINC TRANSPORTER 3 UniProtKB/TrEMBL
Pfam Cation_efflux UniProtKB/TrEMBL
Superfamily-SCOP SSF160240 UniProtKB/TrEMBL
  SSF161111 UniProtKB/TrEMBL
UniProt A0A2R9A447 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9A8U6 ENTREZGENE, UniProtKB/TrEMBL