EPCAM (epithelial cell adhesion molecule) - Rat Genome Database
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Gene: EPCAM (epithelial cell adhesion molecule) Pan paniscus
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Symbol: EPCAM
Name: epithelial cell adhesion molecule
RGD ID: 11700990
Description: ENCODES a protein that exhibits cadherin binding involved in cell-cell adhesion (ortholog); protein-containing complex binding (ortholog); INVOLVED IN cell-cell adhesion via plasma-membrane adhesion molecules (ortholog); negative regulation of apoptotic process (ortholog); negative regulation of cell-cell adhesion mediated by cadherin (ortholog); ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); carcinoma (ortholog); congenital diarrhea 5 with tufting enteropathy (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); bicellular tight junction (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A48,414,791 - 48,432,038 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A48,413,520 - 48,432,038 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A47,490,748 - 47,508,418 (+)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
EPCAM
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A48,414,791 - 48,432,038 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A48,413,520 - 48,432,038 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A47,490,748 - 47,508,418 (+)NCBIMhudiblu_PPA_v0panPan3
EPCAM
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl247,345,158 - 47,387,601 (+)EnsemblGRCh38hg38GRCh38
GRCh38247,369,311 - 47,387,020 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37247,596,450 - 47,614,159 (+)NCBIGRCh37GRCh37hg19GRCh37
GRCh37247,596,287 - 47,614,167 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36247,449,971 - 47,467,661 (+)NCBINCBI36hg18NCBI36
Build 34247,508,117 - 47,525,808NCBI
Celera247,435,038 - 47,452,920 (+)NCBI
Cytogenetic Map2p21NCBI
HuRef247,332,819 - 47,350,813 (+)NCBIHuRef
CHM1_1247,526,380 - 47,544,227 (+)NCBICHM1_1
Epcam
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391787,943,407 - 87,958,555 (+)NCBIGRCm39mm39
GRCm381787,635,979 - 87,651,127 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1787,635,979 - 87,651,129 (+)EnsemblGRCm38mm10GRCm38
MGSCv371788,035,319 - 88,050,467 (+)NCBIGRCm37mm9NCBIm37
MGSCv361787,545,034 - 87,559,453 (+)NCBImm8
Celera1792,042,942 - 92,058,080 (+)NCBICelera
Cytogenetic Map17E4NCBI
Epcam
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.266,880,142 - 6,896,103 (-)NCBI
Rnor_6.0 Ensembl611,281,964 - 11,298,216 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0611,282,194 - 11,308,870 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0621,264,116 - 21,280,078 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4611,176,664 - 11,192,628 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1611,176,663 - 11,192,627 (+)NCBI
Celera66,637,498 - 6,653,429 (-)NCBICelera
Cytogenetic Map6q12NCBI
Epcam
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544114,155,082 - 14,169,161 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544114,155,084 - 14,167,584 (+)NCBIChiLan1.0ChiLan1.0
EPCAM
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1049,485,746 - 49,498,475 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11049,446,165 - 49,498,690 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Epcam
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365085,019,513 - 5,032,610 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EPCAM
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl393,168,852 - 93,185,653 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1393,169,800 - 93,185,221 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2399,312,713 - 99,328,225 (-)NCBISscrofa10.2Sscrofa10.2susScr3
EPCAM
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11459,815,128 - 59,832,360 (-)NCBI
ChlSab1.1 Ensembl1459,815,064 - 59,832,229 (-)Ensembl
Epcam
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473828,755,039 - 28,770,160 (+)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003822677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide SSBP01000171 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000034301   ⟹   ENSPPAP00000011641
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2A48,413,520 - 48,431,636 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000034306   ⟹   ENSPPAP00000011646
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2A48,414,791 - 48,432,038 (+)Ensembl
RefSeq Acc Id: XM_003822677   ⟹   XP_003822725
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.12A48,414,791 - 48,432,038 (+)NCBI
Mhudiblu_PPA_v02A47,490,748 - 47,508,418 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003822725 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003822725   ⟸   XM_003822677
- Sequence:
RefSeq Acc Id: ENSPPAP00000011646   ⟸   ENSPPAT00000034306
RefSeq Acc Id: ENSPPAP00000011641   ⟸   ENSPPAT00000034301
Protein Domains
Thyroglobulin type-1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000029030 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000011641 UniProtKB/TrEMBL
  ENSPPAP00000011646 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000034301 UniProtKB/TrEMBL
  ENSPPAT00000034306 UniProtKB/TrEMBL
Gene3D-CATH 4.10.800.10 UniProtKB/TrEMBL
InterPro EPCAM/Trop-2 UniProtKB/TrEMBL
  EpCAM_N UniProtKB/TrEMBL
  Thyroglobulin_1 UniProtKB/TrEMBL
  Thyroglobulin_1_sf UniProtKB/TrEMBL
KEGG Report pps:100984252 UniProtKB/TrEMBL
NCBI Gene EPCAM ENTREZGENE
PANTHER PTHR14168 UniProtKB/TrEMBL
Pfam EpCAM_N UniProtKB/TrEMBL
  Thyroglobulin_1 UniProtKB/TrEMBL
PROSITE THYROGLOBULIN_1_1 UniProtKB/TrEMBL
  THYROGLOBULIN_1_2 UniProtKB/TrEMBL
SMART SM00211 UniProtKB/TrEMBL
Superfamily-SCOP SSF57610 UniProtKB/TrEMBL
UniProt A0A2R9A8A6_PANPA UniProtKB/TrEMBL
  A0A2R9A8B2_PANPA UniProtKB/TrEMBL