TMEM41B (transmembrane protein 41B) - Rat Genome Database

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Gene: TMEM41B (transmembrane protein 41B) Pan paniscus
Analyze
Symbol: TMEM41B
Name: transmembrane protein 41B
RGD ID: 11700859
Description: ENCODES a protein that exhibits phospholipid scramblase activity (inferred); INVOLVED IN autophagosome assembly (inferred); intracellular lipid transport (inferred); lipid transport (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2911,717,388 - 11,752,220 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11111,675,715 - 11,710,573 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0119,410,997 - 9,445,831 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1119,149,234 - 9,183,383 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl119,151,993 - 9,183,050 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
TMEM41B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2911,717,388 - 11,752,220 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11111,675,715 - 11,710,573 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0119,410,997 - 9,445,831 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1119,149,234 - 9,183,383 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl119,151,993 - 9,183,050 (-)Ensemblpanpan1.1panPan2
TMEM41B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38119,280,654 - 9,314,593 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl119,280,654 - 9,314,636 (-)EnsemblGRCh38hg38GRCh38
GRCh37119,302,201 - 9,336,140 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36119,258,777 - 9,292,872 (-)NCBINCBI36Build 36hg18NCBI36
Build 34119,259,286 - 9,292,697NCBI
Celera119,423,459 - 9,457,551 (-)NCBICelera
Cytogenetic Map11p15.4NCBI
HuRef118,974,894 - 9,008,224 (-)NCBIHuRef
CHM1_1119,301,150 - 9,335,277 (-)NCBICHM1_1
T2T-CHM13v2.0119,365,480 - 9,400,673 (-)NCBIT2T-CHM13v2.0
Tmem41b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397109,570,422 - 109,586,011 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7109,571,394 - 109,586,136 (-)EnsemblGRCm39 Ensembl
GRCm387109,971,215 - 109,986,804 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7109,972,187 - 109,986,929 (-)EnsemblGRCm38mm10GRCm38
MGSCv377117,115,701 - 117,129,744 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367109,763,364 - 109,777,407 (-)NCBIMGSCv36mm8
Celera7109,945,921 - 109,960,005 (-)NCBICelera
Cytogenetic Map7E3NCBI
cM Map757.69NCBI
Tmem41b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81173,447,362 - 173,461,760 (-)NCBIGRCr8
mRatBN7.21164,012,585 - 164,026,967 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1164,012,592 - 164,026,933 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1172,349,193 - 172,363,309 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01179,535,194 - 179,549,310 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01172,217,411 - 172,231,504 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01174,605,833 - 174,620,192 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1174,605,834 - 174,620,064 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01181,591,181 - 181,605,545 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41167,608,204 - 167,622,475 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11167,718,867 - 167,733,138 (-)NCBI
Celera1161,910,821 - 161,925,025 (-)NCBICelera
Cytogenetic Map1q33NCBI
Tmem41b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541425,061,400 - 25,083,663 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541425,063,497 - 25,082,901 (-)NCBIChiLan1.0ChiLan1.0
TMEM41B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12132,598,075 - 32,632,614 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2132,599,425 - 32,621,761 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2132,165,810 - 32,200,567 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02133,471,498 - 33,506,271 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2133,470,997 - 33,495,411 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12132,740,357 - 32,775,070 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02132,906,620 - 32,941,360 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02133,200,581 - 33,235,328 (-)NCBIUU_Cfam_GSD_1.0
Tmem41b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494752,781,698 - 52,810,800 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365288,814,873 - 8,845,167 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365288,824,964 - 8,842,483 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM41B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9223,994 - 250,293 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19223,973 - 249,813 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29239,868 - 265,719 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TMEM41B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1155,490,430 - 55,520,146 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl155,490,607 - 55,520,206 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038153,177,299 - 153,207,307 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmem41b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247661,415,014 - 1,450,916 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247661,416,819 - 1,450,942 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000060838   ⟹   ENSPPAP00000037936
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl119,151,993 - 9,183,050 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000060842   ⟹   ENSPPAP00000037940
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl119,152,139 - 9,183,050 (-)Ensembl
RefSeq Acc Id: XM_024930880   ⟹   XP_024786648
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2911,717,388 - 11,752,202 (-)NCBI
NHGRI_mPanPan11111,676,467 - 11,710,554 (-)NCBI
Mhudiblu_PPA_v0119,410,997 - 9,445,800 (-)NCBI
PanPan1.1119,149,234 - 9,183,383 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034932124   ⟹   XP_034788015
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2911,722,825 - 11,752,220 (-)NCBI
NHGRI_mPanPan11111,681,178 - 11,710,573 (-)NCBI
Mhudiblu_PPA_v0119,416,444 - 9,445,831 (-)NCBI
RefSeq Acc Id: XR_004664994
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2911,717,388 - 11,752,202 (-)NCBI
NHGRI_mPanPan11111,675,715 - 11,710,553 (-)NCBI
Mhudiblu_PPA_v0119,410,997 - 9,445,800 (-)NCBI
Protein Sequences
Protein RefSeqs XP_024786648 (Get FASTA)   NCBI Sequence Viewer  
  XP_034788015 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000037936.1
  ENSPPAP00000037940.1
Reference Protein Sequences
RefSeq Acc Id: XP_024786648   ⟸   XM_024930880
- Peptide Label: isoform X1
- UniProtKB: A0A2R9C7P6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_034788015   ⟸   XM_034932124
- Peptide Label: isoform X2
RefSeq Acc Id: ENSPPAP00000037936   ⟸   ENSPPAT00000060838
RefSeq Acc Id: ENSPPAP00000037940   ⟸   ENSPPAT00000060842
Protein Domains
VTT


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000041691 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000060838.1 UniProtKB/TrEMBL
  ENSPPAT00000060842.1 UniProtKB/TrEMBL
InterPro SNARE_assoc UniProtKB/TrEMBL
  TM41A/B UniProtKB/TrEMBL
NCBI Gene TMEM41B ENTREZGENE
PANTHER PTHR43220 UniProtKB/TrEMBL
  TRANSMEMBRANE PROTEIN 41B UniProtKB/TrEMBL
Pfam SNARE_assoc UniProtKB/TrEMBL
UniProt A0A2R9C7N9_PANPA UniProtKB/TrEMBL
  A0A2R9C7P6 ENTREZGENE, UniProtKB/TrEMBL