CBX6 (chromobox 6) - Rat Genome Database

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Pathways
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Gene: CBX6 (chromobox 6) Pan paniscus
Analyze
Symbol: CBX6
Name: chromobox 6
RGD ID: 11699058
Description: ENCODES a protein that exhibits chromatin binding (inferred); methylated histone binding (inferred); single-stranded RNA binding (inferred); INVOLVED IN negative regulation of transcription by RNA polymerase II (inferred); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH adenylosuccinase lyase deficiency (ortholog); genetic disease (ortholog); glioblastoma (ortholog); FOUND IN chromatin (inferred); heterochromatin (inferred); nuclear body (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: chromobox protein homolog 6
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22348,714,786 - 48,726,440 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12251,406,135 - 51,416,940 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02219,774,136 - 19,784,937 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12237,591,216 - 37,602,377 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2237,595,940 - 37,601,679 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
CBX6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22348,714,786 - 48,726,440 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12251,406,135 - 51,416,940 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02219,774,136 - 19,784,937 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12237,591,216 - 37,602,377 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2237,595,940 - 37,601,679 (-)Ensemblpanpan1.1panPan2
CBX6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382238,861,422 - 38,872,216 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2238,861,422 - 38,872,249 (-)EnsemblGRCh38hg38GRCh38
GRCh372239,257,427 - 39,268,221 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362237,590,189 - 37,598,204 (-)NCBINCBI36Build 36hg18NCBI36
Build 342237,584,749 - 37,592,758NCBI
Celera2223,066,901 - 23,074,916 (-)NCBICelera
Cytogenetic Map22q13.1NCBI
HuRef2222,225,829 - 22,233,844 (-)NCBIHuRef
CHM1_12239,219,153 - 39,227,168 (-)NCBICHM1_1
T2T-CHM13v2.02239,331,798 - 39,342,593 (-)NCBIT2T-CHM13v2.0
Cbx6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391579,708,099 - 79,718,534 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1579,708,097 - 79,718,889 (-)EnsemblGRCm39 Ensembl
GRCm381579,823,898 - 79,834,333 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1579,823,896 - 79,834,688 (-)EnsemblGRCm38mm10GRCm38
MGSCv371579,654,328 - 79,664,763 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361579,651,153 - 79,661,588 (-)NCBIMGSCv36mm8
Celera1581,943,110 - 81,953,546 (-)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1537.85NCBI
Cbx6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87113,253,364 - 113,263,413 (-)NCBIGRCr8
mRatBN7.27111,372,979 - 111,383,026 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7111,372,980 - 111,383,091 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7113,120,974 - 113,130,993 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07115,344,512 - 115,354,531 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07115,313,857 - 115,323,876 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07121,047,996 - 121,058,109 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7121,050,302 - 121,058,029 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07121,038,955 - 121,049,097 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47118,062,267 - 118,070,004 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17118,096,504 - 118,104,234 (-)NCBI
Celera7107,705,925 - 107,713,664 (-)NCBICelera
Cytogenetic Map7q34NCBI
Cbx6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541324,955,721 - 24,966,973 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541324,955,721 - 24,966,015 (-)NCBIChiLan1.0ChiLan1.0
CBX6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11025,967,305 - 25,973,489 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1025,967,300 - 25,988,497 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1025,917,598 - 25,928,682 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01026,752,750 - 26,763,369 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1026,752,754 - 26,791,762 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11026,474,793 - 26,485,867 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01026,785,642 - 26,796,695 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01026,961,989 - 26,973,063 (+)NCBIUU_Cfam_GSD_1.0
Cbx6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049459,511,714 - 9,521,968 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364922,521,553 - 2,532,516 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364922,522,126 - 2,532,382 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CBX6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl59,180,684 - 9,188,620 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.159,180,559 - 9,191,414 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CBX6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11921,525,609 - 21,536,406 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1921,525,596 - 21,536,352 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045104,221,484 - 104,232,319 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cbx6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247529,291,892 - 9,302,688 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247529,291,955 - 9,302,451 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000051409   ⟹   ENSPPAP00000028562
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2237,595,940 - 37,601,679 (-)Ensembl
RefSeq Acc Id: XM_034949357   ⟹   XP_034805248
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22348,714,786 - 48,726,440 (-)NCBI
NHGRI_mPanPan12251,406,135 - 51,416,938 (-)NCBI
Mhudiblu_PPA_v02219,774,136 - 19,784,934 (-)NCBI
RefSeq Acc Id: XM_034949358   ⟹   XP_034805249
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22348,714,786 - 48,726,440 (-)NCBI
NHGRI_mPanPan12251,406,135 - 51,416,940 (-)NCBI
Mhudiblu_PPA_v02219,774,136 - 19,784,937 (-)NCBI
Protein Sequences
Protein RefSeqs XP_034805248 (Get FASTA)   NCBI Sequence Viewer  
  XP_034805249 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000028562.1
Reference Protein Sequences
RefSeq Acc Id: XP_034805249   ⟸   XM_034949358
- Peptide Label: isoform X2
- UniProtKB: A0A2R9BJQ6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034805248   ⟸   XM_034949357
- Peptide Label: isoform X1
- UniProtKB: A0A2R9BJQ6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000028562   ⟸   ENSPPAT00000051409
Protein Domains
Chromo


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000037312 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000051409.1 UniProtKB/TrEMBL
Gene3D-CATH 2.40.50.40 UniProtKB/TrEMBL
InterPro CBX7_C UniProtKB/TrEMBL
  Chromo-like_dom_sf UniProtKB/TrEMBL
  Chromo/chromo_shadow_dom UniProtKB/TrEMBL
  Chromo_domain UniProtKB/TrEMBL
NCBI Gene CBX6 ENTREZGENE
PANTHER CHROMOBOX PROTEIN HOMOLOG 6 UniProtKB/TrEMBL
  POLYCOMB GROUP PROTEIN PC UniProtKB/TrEMBL
Pfam CBX7_C UniProtKB/TrEMBL
  Chromo UniProtKB/TrEMBL
PROSITE CHROMO_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF54160 UniProtKB/TrEMBL
UniProt A0A2R9BJQ6 ENTREZGENE, UniProtKB/TrEMBL