LOC100992118 (cytochrome c oxidase assembly protein COX20, mitochondrial) - Rat Genome Database

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Gene: LOC100992118 (cytochrome c oxidase assembly protein COX20, mitochondrial) Pan paniscus
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Symbol: LOC100992118
Name: cytochrome c oxidase assembly protein COX20, mitochondrial
RGD ID: 11698874
Description: INVOLVED IN mitochondrial cytochrome c oxidase assembly (ortholog); ASSOCIATED WITH cytochrome-c oxidase deficiency disease (ortholog); gastrointestinal stromal tumor (ortholog); Mitochondrial Complex IV Deficiency, Nuclear Type 1 (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: COX20; COX20 Cox2 chaperone homolog; cytochrome c oxidase protein 20 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11225,812,621 - 225,820,925 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1225,812,621 - 225,820,925 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01220,432,447 - 220,440,416 (+)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
LOC100992118
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11225,812,621 - 225,820,925 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1225,812,621 - 225,820,925 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01220,432,447 - 220,440,416 (+)NCBIMhudiblu_PPA_v0panPan3
COX20
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1244,835,616 - 244,845,057 (+)EnsemblGRCh38hg38GRCh38
GRCh381244,835,306 - 244,845,063 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371244,998,608 - 245,008,365 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361243,065,262 - 243,074,982 (+)NCBINCBI36hg18NCBI36
Build 341241,325,003 - 241,332,998NCBI
Celera1218,288,590 - 218,298,310 (+)NCBI
Cytogenetic Map1q44NCBI
HuRef1215,381,801 - 215,391,521 (+)NCBIHuRef
CHM1_11246,270,981 - 246,280,707 (+)NCBICHM1_1
Cox20
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391178,146,379 - 178,150,258 (+)NCBIGRCm39mm39
GRCm39 Ensembl1178,146,695 - 178,150,258 (+)Ensembl
GRCm381178,318,095 - 178,322,693 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1178,319,130 - 178,322,693 (+)EnsemblGRCm38mm10GRCm38
MGSCv371180,249,284 - 180,252,824 (+)NCBIGRCm37mm9NCBIm37
MGSCv361180,155,828 - 180,159,368 (+)NCBImm8
Celera1185,378,778 - 185,382,318 (+)NCBICelera
Cytogenetic Map1H4NCBI
Cox20
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21390,065,900 - 90,075,386 (+)NCBImRatBN7.2
Rnor_6.01396,219,853 - 96,224,023 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1396,219,853 - 96,224,023 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.013100,660,978 - 100,665,148 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41393,969,033 - 93,973,203 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11394,157,910 - 94,162,394 (+)NCBI
Celera1389,626,715 - 89,630,882 (+)NCBICelera
Cytogenetic Map13q25NCBI
LOC102016346
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554067,994,226 - 8,002,639 (+)NCBIChiLan1.0ChiLan1.0
COX20
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1735,819,647 - 35,823,983 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl735,821,040 - 35,823,862 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha735,290,661 - 35,297,709 (+)NCBI
ROS_Cfam_1.0735,646,109 - 35,653,119 (+)NCBI
UMICH_Zoey_3.1735,481,577 - 35,488,625 (+)NCBI
UNSW_CanFamBas_1.0735,496,612 - 35,503,662 (+)NCBI
UU_Cfam_GSD_1.0735,762,159 - 35,769,209 (+)NCBI
LOC101957904
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934448,649,580 - 48,716,259 (+)NCBI
SpeTri2.0NW_0049365266,031,038 - 6,063,842 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
COX20
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1017,471,908 - 17,477,392 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11017,471,837 - 17,477,394 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21019,937,274 - 19,942,798 (+)NCBISscrofa10.2Sscrofa10.2susScr3
COX20
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12581,861,673 - 81,869,597 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl2581,862,035 - 81,869,506 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605584,086,038 - 84,096,523 (+)NCBIVero_WHO_p1.0
LOC101726175
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462477114,767,882 - 14,780,938 (-)NCBIHetGla_female_1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003807989 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide SSBP01000274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000042422   ⟹   ENSPPAP00000019652
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1225,812,621 - 225,820,925 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000042424   ⟹   ENSPPAP00000019654
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1225,812,965 - 225,820,436 (+)Ensembl
RefSeq Acc Id: XM_003807989   ⟹   XP_003808037
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.11225,812,621 - 225,820,925 (+)NCBI
Mhudiblu_PPA_v01220,432,447 - 220,440,416 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003808037 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003808037   ⟸   XM_003807989
- Sequence:
RefSeq Acc Id: ENSPPAP00000019652   ⟸   ENSPPAT00000042422
RefSeq Acc Id: ENSPPAP00000019654   ⟸   ENSPPAT00000042424


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000033034 Ensembl, ENTREZGENE
Ensembl Protein ENSPPAP00000019652 ENTREZGENE
NCBI Gene LOC100992118 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-05-08 LOC100992118  cytochrome c oxidase assembly protein COX20, mitochondrial    cytochrome c oxidase protein 20 homolog  Symbol and/or name change 5135510 APPROVED