MRPS27 (mitochondrial ribosomal protein S27) - Rat Genome Database

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Gene: MRPS27 (mitochondrial ribosomal protein S27) Pan paniscus
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Symbol: MRPS27
Name: mitochondrial ribosomal protein S27
RGD ID: 11698294
Description: ENCODES a protein that exhibits mitochondrial ribosome binding (inferred); rRNA binding (inferred); tRNA binding (inferred); INVOLVED IN cell population proliferation (inferred); positive regulation of mitochondrial translation (inferred); ASSOCIATED WITH genetic disease (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN cytoplasm (inferred); mitochondrial small ribosomal subunit (inferred); mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 28S ribosomal protein S27, mitochondrial; small ribosomal subunit protein mS27
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2442,993,654 - 43,094,247 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1541,147,282 - 41,247,875 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0542,992,341 - 43,092,816 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1543,591,179 - 43,691,620 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl543,591,087 - 43,692,778 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
MRPS27
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2442,993,654 - 43,094,247 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1541,147,282 - 41,247,875 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0542,992,341 - 43,092,816 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1543,591,179 - 43,691,620 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl543,591,087 - 43,692,778 (+)Ensemblpanpan1.1panPan2
MRPS27
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38572,219,403 - 72,320,240 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl572,214,953 - 72,321,717 (-)EnsemblGRCh38hg38GRCh38
GRCh37571,515,230 - 71,616,067 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36571,551,111 - 71,651,809 (-)NCBINCBI36Build 36hg18NCBI36
Build 34571,551,110 - 71,651,809NCBI
Celera567,410,623 - 67,511,470 (-)NCBICelera
Cytogenetic Map5q13.2NCBI
HuRef566,720,806 - 66,821,833 (-)NCBIHuRef
CHM1_1570,947,926 - 71,048,759 (-)NCBICHM1_1
T2T-CHM13v2.0572,700,573 - 72,801,410 (-)NCBIT2T-CHM13v2.0
Mrps27
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391399,481,275 - 99,552,070 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1399,481,294 - 99,552,070 (+)EnsemblGRCm39 Ensembl
GRCm381399,344,767 - 99,415,562 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1399,344,786 - 99,415,562 (+)EnsemblGRCm38mm10GRCm38
MGSCv3713100,114,741 - 100,185,516 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3613100,444,943 - 100,515,718 (+)NCBIMGSCv36mm8
Celera13102,996,858 - 103,070,707 (+)NCBICelera
Cytogenetic Map13D1NCBI
cM Map1352.83NCBI
Mrps27
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8232,474,178 - 32,542,741 (+)NCBIGRCr8
mRatBN7.2230,740,007 - 30,808,577 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl230,740,033 - 30,808,577 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx237,809,820 - 37,877,993 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0235,904,151 - 35,972,350 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0230,708,382 - 30,776,364 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0229,598,344 - 29,666,711 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl229,598,344 - 29,666,724 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0248,760,336 - 48,828,144 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4230,338,206 - 30,386,438 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1230,258,590 - 30,327,163 (+)NCBI
Celera226,765,210 - 26,833,053 (+)NCBICelera
Cytogenetic Map2q12NCBI
Mrps27
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555751,039,280 - 1,126,890 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555751,038,317 - 1,126,923 (-)NCBIChiLan1.0ChiLan1.0
MRPS27
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1255,263,654 - 55,351,615 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl255,264,752 - 55,352,126 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha252,232,345 - 52,319,980 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0255,780,192 - 55,867,921 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl255,780,193 - 55,867,989 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1252,840,441 - 52,928,112 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0253,607,998 - 53,696,238 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0254,499,234 - 54,586,915 (-)NCBIUU_Cfam_GSD_1.0
Mrps27
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213186,604,333 - 186,693,920 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365494,165,061 - 4,254,642 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365494,165,114 - 4,254,634 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MRPS27
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1648,506,795 - 48,616,869 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11648,509,064 - 48,642,571 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21652,497,270 - 52,593,611 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MRPS27
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1466,558,466 - 66,658,057 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl466,557,778 - 66,658,031 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604915,315,159 - 15,414,508 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mrps27
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249051,317,726 - 1,427,769 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249051,317,720 - 1,427,655 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSPPAT00000053097   ⟹   ENSPPAP00000030238
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl543,591,087 - 43,692,778 (+)Ensembl
RefSeq Acc Id: XM_003810486   ⟹   XP_003810534
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2442,993,654 - 43,094,247 (+)NCBI
NHGRI_mPanPan1541,147,282 - 41,247,875 (+)NCBI
Mhudiblu_PPA_v0542,992,341 - 43,092,816 (+)NCBI
PanPan1.1543,591,243 - 43,691,620 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008962839   ⟹   XP_008961087
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2442,993,955 - 43,094,247 (+)NCBI
NHGRI_mPanPan1541,147,582 - 41,247,875 (+)NCBI
Mhudiblu_PPA_v0542,992,523 - 43,092,816 (+)NCBI
PanPan1.1543,591,259 - 43,691,620 (+)NCBI
Sequence:
RefSeq Acc Id: XM_034959969   ⟹   XP_034815860
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2442,993,825 - 43,094,247 (+)NCBI
NHGRI_mPanPan1541,147,456 - 41,247,875 (+)NCBI
Mhudiblu_PPA_v0542,992,399 - 43,092,816 (+)NCBI
Protein Sequences
Protein RefSeqs XP_003810534 (Get FASTA)   NCBI Sequence Viewer  
  XP_008961087 (Get FASTA)   NCBI Sequence Viewer  
  XP_034815860 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000030238.1
RefSeq Acc Id: XP_003810534   ⟸   XM_003810486
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008961087   ⟸   XM_008962839
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_034815860   ⟸   XM_034959969
- Peptide Label: isoform X2
RefSeq Acc Id: ENSPPAP00000030238   ⟸   ENSPPAT00000053097


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000038112 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000053097.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.10 UniProtKB/TrEMBL
InterPro MRPS27 UniProtKB/TrEMBL
  MRPS27/PTCD2 UniProtKB/TrEMBL
  Pentatricopeptide_repeat UniProtKB/TrEMBL
  TPR-like_helical_dom_sf UniProtKB/TrEMBL
NCBI Gene MRPS27 ENTREZGENE
PANTHER 28S RIBOSOMAL PROTEIN S27, MITOCHONDRIAL UniProtKB/TrEMBL
  PTHR21393 UniProtKB/TrEMBL
Pfam MRP-S27 UniProtKB/TrEMBL
PROSITE PPR UniProtKB/TrEMBL
UniProt A0A2R9BLG0_PANPA UniProtKB/TrEMBL