SLC23A2 (solute carrier family 23 member 2) - Rat Genome Database

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Gene: SLC23A2 (solute carrier family 23 member 2) Pan paniscus
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Symbol: SLC23A2
Name: solute carrier family 23 member 2
RGD ID: 11697880
Description: ENCODES a protein that exhibits L-ascorbate:sodium symporter activity (ortholog); INVOLVED IN blood circulation (ortholog); carboxylic acid transmembrane transport (ortholog); cellular response to ethanol (ortholog); ASSOCIATED WITH Binge Drinking (ortholog); cholestasis (ortholog); genetic disease (ortholog); FOUND IN apical plasma membrane (inferred); basal plasma membrane (inferred); basolateral plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC117977290; solute carrier family 23 (nucleobase transporters), member 2; uncharacterized LOC117977290
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2215,801,682 - 6,017,566 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1205,798,507 - 6,014,383 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0204,874,185 - 5,024,750 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1204,670,294 - 4,790,800 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl204,670,294 - 4,790,800 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SLC23A2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2215,801,682 - 6,017,566 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1205,798,507 - 6,014,383 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0204,874,185 - 5,024,750 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1204,670,294 - 4,790,800 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl204,670,294 - 4,790,800 (-)Ensemblpanpan1.1panPan2
SLC23A2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38204,852,358 - 5,010,313 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl204,852,356 - 5,010,293 (-)EnsemblGRCh38hg38GRCh38
GRCh37204,833,004 - 4,990,959 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36204,781,002 - 4,938,939 (-)NCBINCBI36Build 36hg18NCBI36
Build 34204,781,001 - 4,938,939NCBI
Celera204,902,706 - 5,051,861 (-)NCBICelera
Cytogenetic Map20p13NCBI
HuRef204,787,194 - 4,944,817 (-)NCBIHuRef
CHM1_1204,834,496 - 4,992,439 (-)NCBICHM1_1
T2T-CHM13v2.0204,891,820 - 5,049,741 (-)NCBIT2T-CHM13v2.0
Slc23a2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392131,894,416 - 131,987,287 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2131,894,416 - 131,987,028 (-)EnsemblGRCm39 Ensembl
GRCm382132,052,496 - 132,145,320 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2132,052,496 - 132,145,108 (-)EnsemblGRCm38mm10GRCm38
MGSCv372131,878,232 - 131,970,844 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362131,743,937 - 131,836,549 (-)NCBIMGSCv36mm8
Celera2133,279,011 - 133,328,217 (-)NCBICelera
Cytogenetic Map2F2NCBI
cM Map264.15NCBI
Slc23a2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83139,755,583 - 139,913,304 (-)NCBIGRCr8
mRatBN7.23119,302,651 - 119,395,289 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3119,302,666 - 119,460,343 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3123,206,656 - 123,298,423 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03131,793,663 - 131,885,649 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03129,462,752 - 129,554,530 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03124,632,491 - 124,842,225 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3124,632,492 - 124,724,252 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03131,132,124 - 131,266,028 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43119,796,376 - 119,886,011 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13119,701,948 - 119,791,584 (-)NCBI
Celera3118,102,047 - 118,150,099 (-)NCBICelera
Cytogenetic Map3q36NCBI
Slc23a2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541515,565,249 - 15,642,153 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541515,565,344 - 15,677,935 (-)NCBIChiLan1.0ChiLan1.0
SLC23A2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12416,573,616 - 16,709,296 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2416,574,168 - 16,709,296 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2416,425,818 - 16,531,856 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02416,981,643 - 17,127,359 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2416,990,701 - 17,127,359 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12416,613,514 - 16,719,979 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02416,720,357 - 16,826,526 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02417,054,182 - 17,160,266 (+)NCBIUU_Cfam_GSD_1.0
Slc23a2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640165,431,608 - 165,545,259 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648513,885,091 - 13,976,550 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648513,885,067 - 13,976,623 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC23A2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1713,848,728 - 14,011,700 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11713,848,726 - 14,012,054 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21714,819,223 - 14,825,302 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC23A2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1233,092,619 - 33,209,258 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl233,128,061 - 33,212,255 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607111,323,229 - 11,470,263 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc23a2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247415,917,019 - 6,000,720 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247415,917,620 - 6,050,922 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSPPAT00000043384   ⟹   ENSPPAP00000020589
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl204,670,294 - 4,790,800 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000043399   ⟹   ENSPPAP00000020604
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl204,674,934 - 4,750,833 (-)Ensembl
RefSeq Acc Id: XM_034947317   ⟹   XP_034803208
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2215,801,682 - 5,951,978 (-)NCBI
NHGRI_mPanPan1205,798,507 - 5,948,782 (-)NCBI
Mhudiblu_PPA_v0204,874,185 - 5,024,463 (-)NCBI
RefSeq Acc Id: XM_034947318   ⟹   XP_034803209
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2215,801,682 - 5,951,976 (-)NCBI
NHGRI_mPanPan1205,798,507 - 5,948,788 (-)NCBI
Mhudiblu_PPA_v0204,874,185 - 5,024,467 (-)NCBI
RefSeq Acc Id: XM_034947319   ⟹   XP_034803210
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2215,801,682 - 5,952,337 (-)NCBI
NHGRI_mPanPan1205,798,507 - 5,949,155 (-)NCBI
Mhudiblu_PPA_v0204,874,185 - 5,024,750 (-)NCBI
RefSeq Acc Id: XM_034947320   ⟹   XP_034803211
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2215,801,682 - 5,951,975 (-)NCBI
NHGRI_mPanPan1205,798,507 - 5,948,799 (-)NCBI
Mhudiblu_PPA_v0204,874,185 - 5,024,478 (-)NCBI
RefSeq Acc Id: XM_034947321   ⟹   XP_034803212
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2215,801,682 - 5,899,693 (-)NCBI
NHGRI_mPanPan1205,798,507 - 5,896,517 (-)NCBI
Mhudiblu_PPA_v0204,874,185 - 4,972,182 (-)NCBI
RefSeq Acc Id: XM_055104515   ⟹   XP_054960490
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2215,801,682 - 5,952,249 (-)NCBI
NHGRI_mPanPan1205,798,507 - 5,949,070 (-)NCBI
RefSeq Acc Id: XM_055104516   ⟹   XP_054960491
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2215,801,682 - 6,017,566 (-)NCBI
NHGRI_mPanPan1205,798,507 - 6,014,383 (-)NCBI
RefSeq Acc Id: XM_055104517   ⟹   XP_054960492
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2215,801,682 - 5,851,980 (-)NCBI
NHGRI_mPanPan1205,798,507 - 5,848,807 (-)NCBI
RefSeq Acc Id: XM_055104518   ⟹   XP_054960493
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2215,801,682 - 5,951,976 (-)NCBI
NHGRI_mPanPan1205,798,507 - 5,948,788 (-)NCBI
RefSeq Acc Id: XM_057300790   ⟹   XP_057156773
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2215,801,682 - 5,952,457 (-)NCBI
NHGRI_mPanPan1205,798,507 - 5,949,281 (-)NCBI
RefSeq Acc Id: XP_034803210   ⟸   XM_034947319
- Peptide Label: isoform X1
- UniProtKB: A0A2R9AZS2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034803211   ⟸   XM_034947320
- Peptide Label: isoform X1
- UniProtKB: A0A2R9AZS2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034803209   ⟸   XM_034947318
- Peptide Label: isoform X1
- UniProtKB: A0A2R9AZS2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034803208   ⟸   XM_034947317
- Peptide Label: isoform X1
- UniProtKB: A0A2R9AZS2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034803212   ⟸   XM_034947321
- Peptide Label: isoform X1
- UniProtKB: A0A2R9AZS2 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000020604   ⟸   ENSPPAT00000043399
RefSeq Acc Id: ENSPPAP00000020589   ⟸   ENSPPAT00000043384
RefSeq Acc Id: XP_054960491   ⟸   XM_055104516
- Peptide Label: isoform X1
- UniProtKB: A0A2R9AZS2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054960490   ⟸   XM_055104515
- Peptide Label: isoform X1
- UniProtKB: A0A2R9AZS2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054960493   ⟸   XM_055104518
- Peptide Label: isoform X3
- UniProtKB: A0A2R9AZS2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054960492   ⟸   XM_055104517
- Peptide Label: isoform X2
- UniProtKB: A0A2R9AZS2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_057156773   ⟸   XM_057300790
- Peptide Label: isoform X1
- UniProtKB: A0A2R9AZS2 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000033456 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000043384.1 UniProtKB/TrEMBL
  ENSPPAT00000043399.1 UniProtKB/TrEMBL
InterPro NCS2 UniProtKB/TrEMBL
  Xan_ur_permease UniProtKB/TrEMBL
NCBI Gene SLC23A2 ENTREZGENE
PANTHER PTHR11119:SF33 UniProtKB/TrEMBL
  XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBER UniProtKB/TrEMBL
Pfam Xan_ur_permease UniProtKB/TrEMBL
PROSITE XANTH_URACIL_PERMASE UniProtKB/TrEMBL
UniProt A0A2R9AZQ8_PANPA UniProtKB/TrEMBL
  A0A2R9AZS2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-04-20 SLC23A2  solute carrier family 23 member 2  LOC117977290  uncharacterized LOC117977290  Data merged from RGD:32727507 737654 PROVISIONAL