CCDC137 (coiled-coil domain containing 137)

Gene: CCDC137 (coiled-coil domain containing 137) Pan paniscus

Analyze

Symbol:

CCDC137

Name:

coiled-coil domain containing 137

RGD ID:

11694359

Description:

ASSOCIATED WITH genetic disease (ortholog); schizophrenia (ortholog); FOUND IN chromosome (inferred); fibrillar center (inferred); nucleolus (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

coiled-coil domain-containing protein 137

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	98,256,638 - 98,263,857 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	103,156,963 - 103,164,271 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	76,125,930 - 76,133,171 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	81,826,569 - 81,834,389 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	81,826,569 - 81,834,389 (+)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

schizophrenia (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

chromosome (IEA)

fibrillar center (IEA)

nucleolus (IEA)

nucleus (IEA)

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

CCDC137
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	98,256,638 - 98,263,857 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	103,156,963 - 103,164,271 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	76,125,930 - 76,133,171 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	81,826,569 - 81,834,389 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	81,826,569 - 81,834,389 (+)	Ensembl	panpan1.1		panPan2

CCDC137
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	81,666,737 - 81,673,899 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	81,666,737 - 81,673,904 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	79,633,767 - 79,640,929 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	77,244,166 - 77,251,342 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	17	76,278,678 - 76,285,854 (+)	NCBI		Celera
Cytogenetic Map	17	q25.3	NCBI
HuRef	17	75,079,932 - 75,087,108 (+)	NCBI		HuRef
CHM1_1	17	79,719,982 - 79,727,158 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	17	82,583,649 - 82,590,807 (+)	NCBI		T2T-CHM13v2.0

Ccdc137
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	120,348,947 - 120,355,184 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	120,348,941 - 120,355,184 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	120,458,112 - 120,464,358 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	120,458,115 - 120,464,358 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	120,319,443 - 120,325,668 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	120,274,219 - 120,280,444 (+)	NCBI		MGSCv36	mm8
Celera	11	132,193,559 - 132,199,785 (+)	NCBI		Celera
Cytogenetic Map	11	E2	NCBI
cM Map	11	84.15	NCBI

Ccdc137
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	106,229,099 - 106,235,502 (+)	NCBI		GRCr8
mRatBN7.2	10	105,730,776 - 105,737,158 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	105,730,739 - 105,737,158 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	110,835,130 - 110,841,610 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	110,298,160 - 110,304,641 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	105,651,239 - 105,657,621 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	109,630,099 - 109,636,480 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	109,630,099 - 109,636,480 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	109,223,663 - 109,230,044 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	10	104,274,818 - 104,281,199 (+)	NCBI		Celera
Cytogenetic Map	10	q32.3	NCBI

Ccdc137
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955506	1,426,211 - 1,433,381 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955506	1,425,874 - 1,433,741 (-)	NCBI	ChiLan1.0	ChiLan1.0

CCDC137
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	517,299 - 522,753 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	508,595 - 534,772 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	1,119,787 - 1,124,913 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	1,111,109 - 1,116,235 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	1,102,096 - 1,128,289 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	1,136,023 - 1,141,148 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	1,262,617 - 1,267,750 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	1,341,630 - 1,346,755 (-)	NCBI		UU_Cfam_GSD_1.0

Ccdc137
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	1,134,736 - 1,140,512 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936594	5,271,509 - 5,277,235 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936594	5,271,452 - 5,277,223 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CCDC137
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	1,226,691 - 1,232,738 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	1,226,696 - 1,232,748 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

CCDC137
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	73,598,117 - 73,603,921 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	73,598,056 - 73,603,258 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666077	45,004,485 - 45,012,713 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ccdc137
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624801	10,606,020 - 10,612,013 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624801	10,605,971 - 10,612,966 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003831114	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063599488	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSPPAT00000060405 ⟹ ENSPPAP00000037505

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	17	81,826,569 - 81,834,389 (+)	Ensembl

RefSeq Acc Id:

ENSPPAT00000060411 ⟹ ENSPPAP00000037511

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	17	81,826,672 - 81,833,133 (+)	Ensembl

RefSeq Acc Id:

XM_003831114 ⟹ XP_003831162

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	19	98,256,638 - 98,263,857 (+)	NCBI
NHGRI_mPanPan1	17	103,156,963 - 103,164,271 (+)	NCBI
Mhudiblu_PPA_v0	17	76,125,930 - 76,133,171 (+)	NCBI
PanPan1.1	17	81,826,569 - 81,834,389 (+)	NCBI

Sequence:

show sequence

AGCCAGCGTGAGGCTGAGCGCAGGAAGCGGAAGTGCCGATCGGTGGGGCGGAACCATGCAGGAA
GGCGGAAATGGCTTCGCTAGGGAGCCTCCCGGCGTGGAGATGGCGGGAGCTGGTCGCGGAGCAG
CGGTGTCCAGGGTGCAGGCGGGTCCTGGGAGTCCCCGGCGAGCGCGGGGGCGGCAGCAAGTGCA
GCCGCTGGGGAAGCAGCGCCCAGCCCCGTGGCCCGGGCTTCGCAGCAAAGAGAAGAAGAAAGTG
AACTGCAAGCCGAAGAACCAGGATGAACAGGAGATCCCTTTCCGGCTCCGGGAGATTATGAGGA
GCCGCCAAGAGATGAAAAACCCGATCAGTAACAAGAAGAGGAAGAAAGCAGCCCAGGTGACCTT
CAGAAAGACATTGGAGAAGGAAGCAAAGGGAGAGGAGCCCGACATCGCAGTCCCCAAGTTCAAA
CAGAGGAAGGGGGAGTCCGACGGGGCCTATATCCAGCGCATGCAGCAAGAGGCCCAGCATGTGC
TGTTCCTCAGCAAGAACCAGGCCATCCGGCAGCCAGAGGTGCAGGCAGTTCGCAAGGAGAAGTC
TGAGCAGAAAAAAGCAAAAAAAGCGTTCCAGAAGCGGCGACTAGATAAAGTCCGACGGAAAAAG
GAGGAAAAGGCGGCAGACAGGCTGGAGCAGGAGTTGCTCCGAGACACGGTGAAGTTTGGTGAGG
TTGTCCTGCAGCCCCCAGAGCTGACTGCCAGGCCCCGGAGGAGTGTAAGCAAGGACCAGCCTGG
CAGGAGATCGCAGATGCTGCGGATGCTTCTGAGCCCCGGTGGTGTGTCCCAGCCTCTGACCGCC
TCCCTGGCCCGCCAGCGGATTGTGGAGGAGGAGAGAGAGCGGGCCGTGCAGGCCTACAGAGCGT
TGAAGCAGCGGCAGCAGCGGCTGCACGGGGAGCGACCCCACCTCACTTCCCGGAAGAAGCCAGA
GCCGCAGCTGTGATGGAGAGACACCCGGGGCCTGGCCACGCTCTGGGGCAACTGGCACCAGGAG
CTGCTACACCTGGGTAGGAGAGAGGCAGGCCATGCCAGCAGTGTGGGGTGAGGCCTCCAGCTAC
TTGTTCACACGTTGGGCACTAGTGGGTCCACATCTTGCAGGGGGTGAGTGCCCGACGGACTAGG
GCCAAGGCCTGGTTGACAGACGGCCCGTGGGGCCCGGTGTCACTCACAGCTCCATCTCTTTGTT
TTGAACGTCCATTCTGAGTCTCAGCCCAGGTGGACCTTAGGAAGGGCTGGATCCCTGTCCCTGA
ACACCAACTACCGAGACAGCTGATGAGGCTGGCTCAGTGTGTGACAGAGGCCCCCGGGAGTCAG
CAGAGCCGAGCGTACAGTGCACATCAGGCAGAGCAGGCCACGGGCAGGGACGACGCATCGGGAC
AGGGCTCTGCAGGGGACCGTGACTACAGGCCAGCTGTGAGTGGTCCCCTGCAGAGGCTGCCCAC
CCAAGGTTTGGTTGGGGTGAAACATGATGACAACACATACACTTAAGAAGGTGGGAACCGGGGG
CCGGGCGCGGTGGCTCACACCTGTAATGCCAGCACTTTGGGCAGCTGAGGCGAGTGGATCACCT
GAGGTCAGGAGTTCGAACCAGCCTGGCCAACATGGTGAAACTGCATCTCTACTAAAAATACACG
AAAAAAAAACAAACAGTGGGAACAGAGTTGTCACCTACCTAACAGGGCTCTGAGAGAGCCGGGA
GGCCCAAAGTGGCTGGAAGAAGGTAAAGGAAAAATCCTGTCTTGGGCTTGAGGTCACAGAGTGG
GGCCCAGGGGGAGTTCCTGCTGAGGGCAGGGCCTTGCCAGGCTTCAGTCTCCAGTGCCAAAGGA
GGAAATGCCCAGGCTGTCAGCATTTCCAGATGAGAGCAGAAGGGAGAGGCTTAAACCCAAGTCA
CACATCCAGCAATGGAGTCCGACAGCCCAGCACCATCTGGGAACTGAGAAGCACCTCTGCCCGG
CCCCCACACCATGTGGAAAGTGAGGAGCACCTCTGCCCGGCCGCCACCCCGTCTGGCAAGTGAG
GAGTGCTTCTGCCCGGCCACCCCATCTGGGAAGTGAGGAGCGCCTCTGCCCGGCCGCTGTGCAA
CCTTCCAAGTGTGAAGTGACAGCCTTGTGTGTGATGTTTTCTGCCTTCCCCAAGTTTGCACTTT
CGACATTAAAGTTTACTTTTTAGTTAAAAGTTTT

hide sequence

RefSeq Acc Id:

XM_063599488 ⟹ XP_063455558

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	19	98,256,638 - 98,263,857 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_003831162	(Get FASTA)	NCBI Sequence Viewer
	XP_063455558	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000037505.1
	ENSPPAP00000037511.1

RefSeq Acc Id:

XP_003831162 ⟸ XM_003831114

- Peptide Label:

isoform X2

- Sequence:

show sequence

MQEGGNGFAREPPGVEMAGAGRGAAVSRVQAGPGSPRRARGRQQVQPLGKQRPAPWPGLRSKEK
KKVNCKPKNQDEQEIPFRLREIMRSRQEMKNPISNKKRKKAAQVTFRKTLEKEAKGEEPDIAVP
KFKQRKGESDGAYIQRMQQEAQHVLFLSKNQAIRQPEVQAVRKEKSEQKKAKKAFQKRRLDKVR
RKKEEKAADRLEQELLRDTVKFGEVVLQPPELTARPRRSVSKDQPGRRSQMLRMLLSPGGVSQP
LTASLARQRIVEEERERAVQAYRALKQRQQRLHGERPHLTSRKKPEPQL

hide sequence

RefSeq Acc Id:

ENSPPAP00000037505 ⟸ ENSPPAT00000060405

RefSeq Acc Id:

ENSPPAP00000037511 ⟸ ENSPPAT00000060411

RefSeq Acc Id:	XP_063455558 ⟸ XM_063599488
- Peptide Label:	isoform X1

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000041503	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000060405.1	UniProtKB/TrEMBL
	ENSPPAT00000060411.1	UniProtKB/TrEMBL
InterPro	CCDC137	UniProtKB/TrEMBL
KEGG Report	pps:100996076	UniProtKB/TrEMBL
NCBI Gene	CCDC137	ENTREZGENE
PANTHER	COILED-COIL DOMAIN-CONTAINING PROTEIN 137	UniProtKB/TrEMBL
	PTHR21838	UniProtKB/TrEMBL
UniProt	A0A2R9C6G2_PANPA	UniProtKB/TrEMBL
	A0A2R9C6H2_PANPA	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD