SLC44A4 (solute carrier family 44 member 4) - Rat Genome Database

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Gene: SLC44A4 (solute carrier family 44 member 4) Pan paniscus
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Symbol: SLC44A4
Name: solute carrier family 44 member 4
RGD ID: 11693479
Description: ENCODES a protein that exhibits antiporter activity (inferred); choline transmembrane transporter activity (inferred); thiamine pyrophosphate transmembrane transporter activity (inferred); INVOLVED IN acetylcholine biosynthetic process (inferred); acetylcholine secretion (inferred); choline transport (inferred); ASSOCIATED WITH autosomal dominant nonsyndromic deafness 72 (ortholog); proteasome-associated autoinflammatory syndrome 1 (ortholog); FOUND IN apical plasma membrane (inferred); membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: choline transporter-like protein 4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2546,342,553 - 46,354,982 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1642,303,767 - 42,316,468 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0631,526,660 - 31,542,165 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1632,413,441 - 32,428,550 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl632,413,441 - 32,428,550 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
SLC44A4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2546,342,553 - 46,354,982 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1642,303,767 - 42,316,468 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0631,526,660 - 31,542,165 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1632,413,441 - 32,428,550 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl632,413,441 - 32,428,550 (-)Ensemblpanpan1.1panPan2
SLC44A4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38631,863,192 - 31,878,997 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl631,863,192 - 31,879,046 (-)EnsemblGRCh38hg38GRCh38
GRCh37631,830,969 - 31,846,774 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36631,938,948 - 31,954,802 (-)NCBINCBI36Build 36hg18NCBI36
Build 34631,938,953 - 31,954,753NCBI
Celera633,429,555 - 33,445,404 (-)NCBICelera
Cytogenetic Map6p21.33NCBI
HuRef631,616,782 - 31,632,627 (-)NCBIHuRef
CHM1_1631,833,110 - 31,848,964 (-)NCBICHM1_1
T2T-CHM13v2.0631,716,432 - 31,732,232 (-)NCBIT2T-CHM13v2.0
Slc44a4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391735,133,200 - 35,149,412 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1735,133,442 - 35,149,412 (+)EnsemblGRCm39 Ensembl
GRCm381734,914,224 - 34,930,436 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1734,914,466 - 34,930,436 (+)EnsemblGRCm38mm10GRCm38
MGSCv371735,051,411 - 35,067,381 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361734,522,536 - 34,538,412 (+)NCBIMGSCv36mm8
Celera1738,010,698 - 38,026,669 (+)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1718.46NCBI
Slc44a4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8203,907,737 - 3,923,911 (-)NCBIGRCr8
mRatBN7.2203,903,099 - 3,919,215 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl203,903,099 - 3,919,215 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx204,603,033 - 4,619,120 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0203,964,775 - 3,980,862 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0204,501,983 - 4,518,066 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0204,593,389 - 4,609,641 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl204,593,389 - 4,609,631 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0206,673,376 - 6,689,628 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4204,005,154 - 4,021,270 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1204,005,380 - 4,021,497 (-)NCBI
Celera204,110,301 - 4,126,373 (+)NCBICelera
Cytogenetic Map20p12NCBI
Slc44a4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955437383,271 - 397,217 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955437383,523 - 396,456 (-)NCBIChiLan1.0ChiLan1.0
SLC44A4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1121,328,276 - 1,340,752 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl121,328,399 - 1,340,778 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha121,463,542 - 1,476,028 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0121,470,452 - 1,482,939 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl121,466,890 - 1,483,011 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1121,328,172 - 1,340,646 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0121,396,104 - 1,408,588 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0121,461,326 - 1,474,043 (-)NCBIUU_Cfam_GSD_1.0
Slc44a4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494635,878,349 - 35,897,867 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367271,663,747 - 1,682,941 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367271,663,593 - 1,683,061 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC44A4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl723,958,942 - 23,977,482 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1723,958,935 - 23,977,466 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2727,834,744 - 27,853,364 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC44A4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11740,142,349 - 40,158,024 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1740,142,730 - 40,157,858 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604431,777,498 - 31,794,091 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc44a4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475424,368,716 - 24,382,397 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475424,368,697 - 24,381,959 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000055844   ⟹   ENSPPAP00000032974
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl632,413,441 - 32,428,550 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000055847   ⟹   ENSPPAP00000032977
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl632,413,654 - 32,428,484 (-)Ensembl
RefSeq Acc Id: XM_003831545   ⟹   XP_003831593
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2546,342,553 - 46,354,982 (-)NCBI
NHGRI_mPanPan1642,303,767 - 42,316,468 (-)NCBI
Mhudiblu_PPA_v0631,526,660 - 31,542,165 (-)NCBI
PanPan1.1632,413,441 - 32,428,550 (-)NCBI
Sequence:
RefSeq Acc Id: XM_055113443   ⟹   XP_054969418
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2546,342,553 - 46,354,982 (-)NCBI
NHGRI_mPanPan1642,303,767 - 42,316,468 (-)NCBI
Protein Sequences
Protein RefSeqs XP_003831593 (Get FASTA)   NCBI Sequence Viewer  
  XP_054969418 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000032974.1
  ENSPPAP00000032977.1
RefSeq Acc Id: XP_003831593   ⟸   XM_003831545
- Peptide Label: isoform X1
- UniProtKB: A0A2R9C317 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSPPAP00000032974   ⟸   ENSPPAT00000055844
Ensembl Acc Id: ENSPPAP00000032977   ⟸   ENSPPAT00000055847
RefSeq Acc Id: XP_054969418   ⟸   XM_055113443
- Peptide Label: isoform X2
- UniProtKB: A0A2R9BTI1 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000039346 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000055844.1 UniProtKB/TrEMBL
  ENSPPAT00000055847.1 UniProtKB/TrEMBL
InterPro Choline_transptr-like UniProtKB/TrEMBL
KEGG Report pps:100992063 UniProtKB/TrEMBL
NCBI Gene SLC44A4 ENTREZGENE
PANTHER CHOLINE TRANSPORTER-LIKE PROTEIN 4 UniProtKB/TrEMBL
  PTHR12385 UniProtKB/TrEMBL
Pfam Choline_transpo UniProtKB/TrEMBL
UniProt A0A2R9BTI1 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9C317 ENTREZGENE, UniProtKB/TrEMBL