CPNE7 (copine 7) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: CPNE7 (copine 7) Pan paniscus
Analyze
Symbol: CPNE7
Name: copine 7
RGD ID: 11692392
Description: ENCODES a protein that exhibits calcium-dependent phospholipid binding (inferred); INVOLVED IN cellular response to calcium ion (inferred); ASSOCIATED WITH 16Q24.3 Microdeletion Syndrome (ortholog); autosomal recessive chronic granulomatous disease 4 (ortholog); Fanconi anemia (ortholog); FOUND IN synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: copine-7; copine-7-like; LOC100972517; LOC112437426
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21899,359,606 - 99,381,701 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan116105,276,736 - 105,298,863 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01670,327,952 - 70,349,898 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11689,937,091 - 89,951,891 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1689,936,172 - 89,955,115 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
nucleus  (IEA)
plasma membrane  (IEA)
synapse  (ISO)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
CPNE7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21899,359,606 - 99,381,701 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan116105,276,736 - 105,298,863 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01670,327,952 - 70,349,898 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11689,937,091 - 89,951,891 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1689,936,172 - 89,955,115 (+)Ensemblpanpan1.1panPan2
CPNE7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381689,575,758 - 89,597,246 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1689,575,758 - 89,597,246 (+)EnsemblGRCh38hg38GRCh38
GRCh371689,642,166 - 89,663,654 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361688,169,677 - 88,191,155 (+)NCBINCBI36Build 36hg18NCBI36
Build 341688,169,676 - 88,191,154NCBI
Celera1674,705,518 - 74,726,398 (+)NCBICelera
Cytogenetic Map16q24.3NCBI
HuRef1675,338,670 - 75,358,493 (+)NCBIHuRef
CHM1_11691,053,456 - 91,074,511 (+)NCBICHM1_1
T2T-CHM13v2.01695,656,186 - 95,677,486 (+)NCBIT2T-CHM13v2.0
Cpne7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398123,844,054 - 123,861,924 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8123,844,113 - 123,861,921 (+)EnsemblGRCm39 Ensembl
GRCm388123,117,313 - 123,135,185 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8123,117,374 - 123,135,182 (+)EnsemblGRCm38mm10GRCm38
MGSCv378125,641,274 - 125,659,085 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368126,003,547 - 126,021,272 (+)NCBIMGSCv36mm8
Celera8127,354,880 - 127,372,744 (+)NCBICelera
Cytogenetic Map8E1NCBI
cM Map872.06NCBI
Cpne7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81968,072,165 - 68,091,197 (+)NCBIGRCr8
mRatBN7.21951,164,316 - 51,182,676 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1951,166,034 - 51,182,677 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1957,961,280 - 57,977,864 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01958,641,026 - 58,657,595 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01960,859,881 - 60,876,466 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01955,929,555 - 55,946,251 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1955,929,609 - 55,946,250 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01966,634,960 - 66,651,622 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41953,449,428 - 53,466,072 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11953,454,423 - 53,470,317 (+)NCBI
Celera1950,401,641 - 50,418,280 (+)NCBICelera
Cytogenetic Map19q12NCBI
Cpne7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555413,159,818 - 3,170,428 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555413,159,485 - 3,170,304 (+)NCBIChiLan1.0ChiLan1.0
CPNE7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1563,951,547 - 63,978,389 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl563,951,549 - 63,978,601 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha563,964,401 - 63,990,428 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0564,179,595 - 64,205,647 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl564,179,600 - 64,205,968 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1564,199,565 - 64,225,563 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0564,037,029 - 64,063,036 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0564,443,812 - 64,469,864 (-)NCBIUU_Cfam_GSD_1.0
Cpne7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934924,659,779 - 24,673,456 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936641413,759 - 426,507 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936641413,331 - 426,514 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CPNE7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.16393,756 - 410,781 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CPNE7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1574,937,985 - 74,953,406 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666047557,511 - 572,149 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000042330   ⟹   ENSPPAP00000019562
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1689,936,172 - 89,955,115 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000042336   ⟹   ENSPPAP00000019568
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1689,937,105 - 89,954,492 (+)Ensembl
RefSeq Acc Id: XM_034941120   ⟹   XP_034797011
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21899,359,644 - 99,381,701 (+)NCBI
NHGRI_mPanPan116105,276,764 - 105,298,863 (+)NCBI
Mhudiblu_PPA_v01670,327,987 - 70,349,898 (+)NCBI
RefSeq Acc Id: XM_034941121   ⟹   XP_034797012
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21899,359,606 - 99,381,701 (+)NCBI
NHGRI_mPanPan116105,276,736 - 105,298,863 (+)NCBI
Mhudiblu_PPA_v01670,327,952 - 70,349,898 (+)NCBI
RefSeq Acc Id: XM_055099325   ⟹   XP_054955300
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21899,359,635 - 99,379,365 (+)NCBI
NHGRI_mPanPan116105,276,754 - 105,296,527 (+)NCBI
Protein Sequences
Protein RefSeqs XP_034797011 (Get FASTA)   NCBI Sequence Viewer  
  XP_034797012 (Get FASTA)   NCBI Sequence Viewer  
  XP_054955300 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000019562.1
  ENSPPAP00000019568.1
Reference Protein Sequences
RefSeq Acc Id: XP_034797012   ⟸   XM_034941121
- Peptide Label: isoform X2
- UniProtKB: A0A2R9AQY1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034797011   ⟸   XM_034941120
- Peptide Label: isoform X1
- UniProtKB: A0A2R9AQY1 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000019568   ⟸   ENSPPAT00000042336
RefSeq Acc Id: ENSPPAP00000019562   ⟸   ENSPPAT00000042330
RefSeq Acc Id: XP_054955300   ⟸   XM_055099325
- Peptide Label: isoform X3
Protein Domains
C2   VWFA


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000032990 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000042330.1 UniProtKB/TrEMBL
  ENSPPAT00000042336.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.150 UniProtKB/TrEMBL
  3.40.50.410 UniProtKB/TrEMBL
InterPro C2_dom UniProtKB/TrEMBL
  C2_domain_sf UniProtKB/TrEMBL
  C2B_Copine UniProtKB/TrEMBL
  Copine UniProtKB/TrEMBL
  Copine_C UniProtKB/TrEMBL
  VWF_A UniProtKB/TrEMBL
  vWFA_dom_sf UniProtKB/TrEMBL
NCBI Gene CPNE7 ENTREZGENE
PANTHER COPINE-7 UniProtKB/TrEMBL
  PTHR10857 UniProtKB/TrEMBL
Pfam Copine UniProtKB/TrEMBL
  PF00168 UniProtKB/TrEMBL
PROSITE PS50004 UniProtKB/TrEMBL
  VWFA UniProtKB/TrEMBL
SMART SM00239 UniProtKB/TrEMBL
  VWA UniProtKB/TrEMBL
Superfamily-SCOP SSF49562 UniProtKB/TrEMBL
  SSF53300 UniProtKB/TrEMBL
UniProt A0A2R9AQC6_PANPA UniProtKB/TrEMBL
  A0A2R9AQY1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-07-01 CPNE7  copine 7  LOC100972517  copine-7  Symbol and/or name change 5135510 APPROVED
2020-06-11 LOC100972517  copine-7  LOC112437426  copine-7-like  Data merged from RGD:13583973 737654 PROVISIONAL
2018-05-08 LOC100972517  copine-7  CPNE7  copine 7  Symbol and/or name change 5135510 APPROVED