FCN3 (ficolin 3) - Rat Genome Database

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Gene: FCN3 (ficolin 3) Pan paniscus
Analyze
Symbol: FCN3
Name: ficolin 3
RGD ID: 11690595
Description: ENCODES a protein that exhibits antigen binding (ortholog); carbohydrate derivative binding (ortholog); INVOLVED IN complement activation (ortholog); complement activation, lectin pathway (ortholog); defense response to virus (ortholog); ASSOCIATED WITH hepatocellular carcinoma (ortholog); Immunodeficiency due to Ficolin 3 Deficiency (ortholog); microcephaly (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: ficolin (collagen/fibrinogen domain containing) 3 (Hakata antigen); ficolin-3; ficolin-3-like; LOC100978556; LOC100986049
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1127,676,740 - 27,683,889 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl127,676,866 - 27,683,861 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0126,620,373 - 26,636,424 (-)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Genomics

Comparative Map Data
FCN3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1127,676,740 - 27,683,889 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl127,676,866 - 27,683,861 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0126,620,373 - 26,636,424 (-)NCBIMhudiblu_PPA_v0panPan3
FCN3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl127,369,110 - 27,374,824 (-)EnsemblGRCh38hg38GRCh38
GRCh38127,369,110 - 27,374,852 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37127,695,601 - 27,701,343 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36127,568,188 - 27,573,902 (-)NCBINCBI36hg18NCBI36
Build 34127,379,744 - 27,385,457NCBI
Celera126,092,884 - 26,098,611 (-)NCBI
Cytogenetic Map1p36.11NCBI
HuRef125,951,741 - 25,957,459 (-)NCBIHuRef
CHM1_1127,810,336 - 27,816,061 (-)NCBICHM1_1
Fcna
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39225,514,677 - 25,525,448 (-)NCBIGRCm39mm39
GRCm39 Ensembl225,514,678 - 25,518,042 (-)Ensembl
GRCm38225,624,665 - 25,635,440 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl225,624,666 - 25,628,030 (-)EnsemblGRCm38mm10GRCm38
MGSCv37225,480,187 - 25,483,494 (-)NCBIGRCm37mm9NCBIm37
MGSCv36225,446,675 - 25,449,923 (-)NCBImm8
Celera225,353,030 - 25,356,335 (-)NCBICelera
Cytogenetic Map2A3NCBI
Fcna
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.238,445,904 - 8,449,128 (-)NCBI
Rnor_6.0 Ensembl32,849,984 - 2,853,272 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.032,850,006 - 2,853,230 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.032,831,419 - 2,834,620 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.433,797,916 - 3,801,117 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.133,797,915 - 3,801,117 (-)NCBI
Celera33,270,846 - 3,274,047 (-)NCBICelera
Cytogenetic Map3p13NCBI
Fcn3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554526,630,505 - 6,635,235 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554526,630,548 - 6,635,334 (-)NCBIChiLan1.0ChiLan1.0
FCN3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha269,476,250 - 69,480,708 (+)NCBI
ROS_Cfam_1.0273,460,937 - 73,465,399 (+)NCBI
UMICH_Zoey_3.1270,286,939 - 70,291,401 (+)NCBI
UNSW_CanFamBas_1.0271,298,410 - 71,302,868 (+)NCBI
UU_Cfam_GSD_1.0272,294,469 - 72,298,931 (+)NCBI
Fcn3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505845,855,319 - 45,861,098 (-)NCBI
SpeTri2.0NW_00493647411,680,166 - 11,685,214 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FCN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11274,125,666 - 274,132,917 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21308,216,807 - 308,224,034 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FCN3
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120105,414,626 - 105,420,684 (+)NCBI
ChlSab1.1 Ensembl20105,414,650 - 105,420,558 (+)Ensembl
Vero_WHO_p1.0NW_02366603311,038,178 - 11,049,768 (-)NCBI
Fcn3
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476411,265,740 - 11,269,588 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000052855   ⟹   ENSPPAP00000030000
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl127,676,866 - 27,683,861 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000052858   ⟹   ENSPPAP00000030003
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl127,676,866 - 27,683,861 (-)Ensembl
RefSeq Acc Id: XM_003809479   ⟹   XP_003809527
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1127,676,740 - 27,683,889 (-)NCBI
Mhudiblu_PPA_v0126,620,373 - 26,636,116 (-)NCBI
Sequence:
RefSeq Acc Id: XM_024927012   ⟹   XP_024782780
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1127,676,740 - 27,683,889 (-)NCBI
Mhudiblu_PPA_v0126,620,764 - 26,636,144 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034959187   ⟹   XP_034815078
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0126,620,373 - 26,636,424 (-)NCBI
Protein Sequences
Protein RefSeqs XP_003809527 (Get FASTA)   NCBI Sequence Viewer  
  XP_024782780 (Get FASTA)   NCBI Sequence Viewer  
  XP_034815078 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003809527   ⟸   XM_003809479
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_024782780   ⟸   XM_024927012
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_034815078   ⟸   XM_034959187
- Peptide Label: isoform X1
RefSeq Acc Id: ENSPPAP00000030000   ⟸   ENSPPAT00000052855
RefSeq Acc Id: ENSPPAP00000030003   ⟸   ENSPPAT00000052858
Protein Domains
Fibrinogen C-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000038009 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000030000 ENTREZGENE, UniProtKB/TrEMBL
  ENSPPAP00000030003 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000052855 UniProtKB/TrEMBL
  ENSPPAT00000052858 UniProtKB/TrEMBL
Gene3D-CATH 3.90.215.10 UniProtKB/TrEMBL
  4.10.530.10 UniProtKB/TrEMBL
InterPro Fibrinogen-like_C UniProtKB/TrEMBL
  Fibrinogen_a/b/g_C_1 UniProtKB/TrEMBL
  Fibrinogen_a/b/g_C_2 UniProtKB/TrEMBL
  Fibrinogen_a/b/g_C_dom UniProtKB/TrEMBL
  Fibrinogen_CS UniProtKB/TrEMBL
NCBI Gene LOC100986049 ENTREZGENE
Pfam Fibrinogen_C UniProtKB/TrEMBL
PROSITE FIBRINOGEN_C_1 UniProtKB/TrEMBL
  FIBRINOGEN_C_2 UniProtKB/TrEMBL
SMART FBG UniProtKB/TrEMBL
Superfamily-SCOP SSF56496 UniProtKB/TrEMBL
UniProt A0A2R9BK12_PANPA UniProtKB/TrEMBL
  A0A2R9BKU3_PANPA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-05-08 FCN3  ficolin 3  LOC100978556  ficolin-3-like  Data Merged 737654 PROVISIONAL
2018-05-08 FCN3  ficolin 3  LOC100986049  ficolin-3  Symbol and/or name change 5135510 APPROVED