TERF1 (telomeric repeat binding factor 1) - Rat Genome Database

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Gene: TERF1 (telomeric repeat binding factor 1) Pan paniscus
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Symbol: TERF1
Name: telomeric repeat binding factor 1
RGD ID: 11690361
Description: ENCODES a protein that exhibits ankyrin repeat binding (ortholog); DNA binding, bending (ortholog); double-stranded telomeric DNA binding (ortholog); INVOLVED IN meiotic telomere clustering (ortholog); negative regulation of DNA replication (ortholog); negative regulation of establishment of protein localization to telomere (ortholog); ASSOCIATED WITH breast cancer (ortholog); squamous cell carcinoma (ortholog); stomach cancer (ortholog); FOUND IN chromosome, telomeric region (ortholog); fibrillar center (ortholog); nuclear body (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: telomeric repeat-binding factor 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1871,192,716 - 71,231,648 (+)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v0869,545,115 - 69,583,997 (+)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

Genomics

Comparative Map Data
TERF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1871,192,716 - 71,231,648 (+)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v0869,545,115 - 69,583,997 (+)NCBIMhudiblu_PPA_v0panPan3
TERF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl873,008,856 - 73,048,123 (+)EnsemblGRCh38hg38GRCh38
GRCh38873,008,856 - 73,048,123 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37873,921,099 - 73,960,358 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36874,083,661 - 74,122,281 (+)NCBINCBI36hg18NCBI36
Build 34874,083,662 - 74,122,281NCBI
Celera869,918,262 - 69,957,163 (+)NCBI
Cytogenetic Map8q21.11NCBI
HuRef869,411,980 - 69,450,876 (+)NCBIHuRef
CHM1_1873,973,943 - 74,012,842 (+)NCBICHM1_1
Terf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39115,875,634 - 15,914,276 (+)NCBIGRCm39mm39
GRCm39 Ensembl115,875,870 - 15,914,276 (+)Ensembl
GRCm38115,805,546 - 15,844,052 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl115,805,646 - 15,844,052 (+)EnsemblGRCm38mm10GRCm38
MGSCv37115,795,739 - 15,833,510 (+)NCBIGRCm37mm9NCBIm37
MGSCv36115,790,872 - 15,828,643 (+)NCBImm8
Celera115,750,793 - 15,788,563 (+)NCBICelera
Cytogenetic Map1A3NCBI
cM Map14.88NCBI
Terf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.253,443,103 - 3,472,377 (-)NCBI
Rnor_6.0 Ensembl52,853,459 - 2,882,668 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.052,853,455 - 2,882,731 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.052,843,150 - 2,872,418 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.452,556,918 - 2,586,086 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.152,556,917 - 2,586,086 (-)NCBI
Celera53,039,138 - 3,068,345 (-)NCBICelera
Cytogenetic Map5q11NCBI
Terf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554447,103,552 - 7,150,323 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554447,103,282 - 7,149,450 (-)NCBIChiLan1.0ChiLan1.0
TERF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12921,664,378 - 21,701,491 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2921,664,186 - 21,700,495 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2921,929,296 - 21,966,341 (+)NCBI
ROS_Cfam_1.02921,773,860 - 21,811,415 (+)NCBI
UMICH_Zoey_3.12921,832,463 - 21,869,553 (+)NCBI
UNSW_CanFamBas_1.02921,868,610 - 21,906,117 (+)NCBI
UU_Cfam_GSD_1.02922,149,876 - 22,187,001 (+)NCBI
Terf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530357,612,694 - 57,639,199 (-)NCBI
SpeTri2.0NW_0049366481,809,395 - 1,835,890 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TERF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl462,796,999 - 62,831,422 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1462,797,244 - 62,831,459 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2468,341,702 - 68,375,863 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TERF1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1868,608,830 - 68,647,220 (+)NCBI
ChlSab1.1 Ensembl868,608,844 - 68,648,171 (+)Ensembl
Vero_WHO_p1.0NW_02366603972,734,995 - 72,774,562 (-)NCBI
Terf1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474418,120,677 - 18,156,920 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_008956694   ⟹   XP_008954942
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1871,192,716 - 71,231,538 (+)NCBI
Mhudiblu_PPA_v0869,545,115 - 69,583,997 (+)NCBI
Sequence:
RefSeq Acc Id: XM_014345953   ⟹   XP_014201439
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1871,192,716 - 71,231,529 (+)NCBI
Mhudiblu_PPA_v0869,545,115 - 69,583,997 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008954942 (Get FASTA)   NCBI Sequence Viewer  
  XP_014201439 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_008954942   ⟸   XM_008956694
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_014201439   ⟸   XM_014345953
- Peptide Label: isoform X2
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene TERF1 ENTREZGENE