HEPACAM (hepatic and glial cell adhesion molecule)

Gene: HEPACAM (hepatic and glial cell adhesion molecule) Pan paniscus

Analyze

Symbol:

HEPACAM

Name:

hepatic and glial cell adhesion molecule

RGD ID:

11689756

Description:

INVOLVED IN protein localization (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); Chromosome 11, Partial Trisomy 11q (ortholog); Dwarfism (ortholog); FOUND IN astrocyte end-foot (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

hepatocyte cell adhesion molecule

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	125,615,350 - 125,632,494 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	126,720,241 - 126,737,381 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	119,746,915 - 119,764,062 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	123,662,852 - 123,678,421 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	123,663,210 - 123,678,015 (-)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autism spectrum disorder (ISO)

Chromosome 11, Partial Trisomy 11q (ISO)

Dwarfism (ISO)

genetic disease (ISO)

holoprosencephaly 11 (ISO)

intellectual disability (ISO)

Jacobsen Syndrome (ISO)

megalencephalic leukoencephalopathy with subcortical cysts (ISO)

megalencephalic leukoencephalopathy with subcortical cysts 1 (ISO)

megalencephalic leukoencephalopathy with subcortical cysts 2A (ISO)

megalencephalic leukoencephalopathy with subcortical cysts 2B (ISO)

schizophrenia (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

protein localization (IEA,ISO)

Cellular Component

astrocyte end-foot (ISO)

axon (IEA)

cell-cell junction (IEA)

membrane (IEA)

Molecular Function

protein binding (ISO)

References

Genomics

Comparative Map Data

HEPACAM
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	125,615,350 - 125,632,494 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	126,720,241 - 126,737,381 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	119,746,915 - 119,764,062 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	123,662,852 - 123,678,421 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	123,663,210 - 123,678,015 (-)	Ensembl	panpan1.1		panPan2

HEPACAM
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	124,919,205 - 124,936,047 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	124,919,205 - 124,936,412 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	124,789,101 - 124,805,943 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	124,294,355 - 124,311,518 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	11	121,949,291 - 121,966,450 (-)	NCBI		Celera
Cytogenetic Map	11	q24.2	NCBI
HuRef	11	120,731,416 - 120,748,491 (-)	NCBI		HuRef
CHM1_1	11	124,675,257 - 124,692,409 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	11	124,947,841 - 124,964,684 (-)	NCBI		T2T-CHM13v2.0

Hepacam
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	37,278,652 - 37,297,868 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	37,278,647 - 37,297,871 (+)	Ensembl		GRCm39 Ensembl
GRCm38	9	37,367,356 - 37,386,572 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	37,367,351 - 37,386,575 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	37,175,191 - 37,194,157 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	9	37,117,277 - 37,136,243 (+)	NCBI		MGSCv36	mm8
Celera	9	34,581,970 - 34,600,929 (+)	NCBI		Celera
Cytogenetic Map	9	A4	NCBI
cM Map	9	20.76	NCBI

Hepacam
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	45,276,594 - 45,294,006 (+)	NCBI		GRCr8
mRatBN7.2	8	37,087,864 - 37,106,759 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	37,087,857 - 37,105,920 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	8	39,848,264 - 39,866,969 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	39,848,448 - 39,865,130 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	39,849,478 - 39,867,855 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	38,622,954 - 38,639,861 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	8	38,631,648 - 38,648,624 (+)	NCBI
Celera	8	37,346,023 - 37,363,913 (-)	NCBI		Celera
Cytogenetic Map	8	q22	NCBI

Hepacam
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955412	25,980,460 - 25,998,482 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955412	25,981,235 - 25,998,296 (-)	NCBI	ChiLan1.0	ChiLan1.0

HEPACAM
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	9,520,998 - 9,535,019 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	9,521,740 - 9,534,958 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	9,566,458 - 9,580,496 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	9,460,731 - 9,474,776 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	9,461,523 - 9,474,749 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	9,533,390 - 9,547,430 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	9,503,845 - 9,517,897 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	9,540,543 - 9,554,588 (+)	NCBI		UU_Cfam_GSD_1.0

Hepacam
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	107,105,778 - 107,119,096 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936743	1,352,686 - 1,366,787 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936743	1,353,340 - 1,366,724 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

HEPACAM
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	52,115,504 - 52,131,522 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	52,115,494 - 52,131,801 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	57,632,582 - 57,647,218 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

HEPACAM
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	116,063,150 - 116,080,620 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	116,063,166 - 116,080,125 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666043	10,038,405 - 10,055,236 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Hepacam
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624927	919,908 - 939,762 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624927	922,272 - 939,429 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_024930954	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034933964	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034933968	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063608299	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSPPAT00000050816 ⟹ ENSPPAP00000027973

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	11	123,663,210 - 123,678,015 (-)	Ensembl

RefSeq Acc Id:

XM_024930954 ⟹ XP_024786722

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	9	125,615,350 - 125,632,491 (-)	NCBI
NHGRI_mPanPan1	11	126,720,241 - 126,737,375 (-)	NCBI
Mhudiblu_PPA_v0	11	119,746,915 - 119,764,056 (-)	NCBI
PanPan1.1	11	123,662,852 - 123,678,421 (-)	NCBI

Sequence:

show sequence

GTGAGGTGGAGACAGGGTAGGTTGGGACACAAAGTCCAGTTAAGTGTGTGTCCCAGCTCAGTGC
TCTGAGCCCAGATCCTCATCTCCCTGGGTAGTGAGGCTCAGCACAGACAAGCAACCAACTGCTG
GGCTGCCGGTGCCCCCCATGTTGGAAACTGAGTTGGAGATTATCTCCTAAGCAGATACCTGCTT
CCAAACTGGGGATGTAGGGCTTGGAAACTAGAAAATGCCAGGTCTGAGGGAGAGGAAAGAACAA
GTCCAGCAATACACAGAGCTCTGTGTATTCAGAGGGAAGTTGGCAGGGTTGTGTTCGGGCAGAG
AAACTCCGAGTGGTACAAAGGGGACGTGCCCAGAGTGGAGAAATCATGCTAATTGTCTGCACTA
GAGCTGGAGAACGCCACCCAAAATGAAGAGAGAAAGGGGAGCCCTGTCCAGAGCCTCCAGGGCC
CTGCGCCTCGCTCCTTTTGTCTACCTTCTTCTGATCCAGACAGACCCCCTGGAGGGGGTGAACA
TCACCAGCCCCGTGCGCCTGATCCATGGCACCGTGGGGAAGTCGGCTCTGCTTTCTGTGCAGTA
CAGCAGTACCAGCAGCGACAGGCCTGTAGTGAAGTGGCAGCTGAAGCGGGACAAGCCAGTGACC
GTGGTGCAGTCCATTGGCACGGAGGTCATCGGCACCCTGCGGCCTGACTATCGAGACCGTATCC
GACTCTTTGAAAATGGCTCCCTGCTTCTCAGCGACCTGCAGCTGGCCGATGAGGGCACCTATGA
GGTCGAGATCTCCATCACCGACGACACCTTCACTGGGGAGAAGACCATCAACCTTACTGTAGAT
GTGCCCATTTCGAGGCCACAGGTGTTGGTGGCTTCAACCACTGTGCTGGAGCTCAGCGAGGCCT
TCACCTTGAACTGCTCACACGAGAATGGCACCAAGCCCAGCTACACCTGGCTGAAGGATGGCAA
GCCCCTCCTCAATGACTCGAGAATGCTCCTGTCCCCCGACCAAAAGGTGCTCACCATCACCCGC
GTGCTCATGGAGGATGACGACCTGTACAGCTGCGTGGTGGAGAACCCCATCAGCCAGGGCCGCA
GCCTGCCCGTCAAGATCACCGTATACAGAAGAAGCTCCCTTTACATCATCTTGTCTACAGGAGG
CATCTTCCTCCTTGTGACCTTGGTGACAGTCTGTGCCTGCTGGAAACCCTCCAAAAGGAAACAG
AAGAAGCTAGAAAAGCAAAACTCCCTGGAATACATGGATCAGAATGATGACCGCCTGAAACCAG
AAGCGGACACCCTCCCTCGAAGTGGTGAGCAGGAACGGAAGAACCCCATGGCACTCTATATCCT
GAAGGACAAGGACTCCCCGGAGACCGAGGAGAACCCGGCCCCGGAGCCTCGAAGCGTGACGGAG
CCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCTCGCGCAGCGC
CTCGCGCACACTGCGGACTGCGGGCGTGCACATAATCCGCGAGCAAGACGAGGCCGGCCCGGTG
GAGATCAGCGCCTGAGCCGCCTCGGGATCCCCTGAGAGGCGCCCGCGGTCTGCGGCCAGTGGCC
CGGGGGAAGGCTGGGGCTGGGAAGCCCGGGCGCGGCGCGCTGGGGACGAGGGGAGGTCCCGGCG
GGGCGCTGGTGTCTCGGGTGTGAACGTGTATGAGCATGCGCAGACGGAGGCGGGTGCGCGGAGG
CGGCCGTGTTGATATGGTGAAACCGGGTCGCATTTGCTTCCGGTTTACTGGCTGTGTTCTCACT
TGGTATAGGTTGTGCCCTCTTAGGACCACATAGATTATTACATTTCTGGCCCAATACCCAAAAG
GGTTTTATGGAAACTAACATCAGTAACCTAACCCCCGTGACTATCCTGTGCTC

hide sequence

RefSeq Acc Id:

XM_034933964 ⟹ XP_034789855

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	9	125,615,350 - 125,632,494 (-)	NCBI
NHGRI_mPanPan1	11	126,720,241 - 126,737,377 (-)	NCBI
Mhudiblu_PPA_v0	11	119,747,611 - 119,764,059 (-)	NCBI

RefSeq Acc Id:

XM_034933968 ⟹ XP_034789859

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	9	125,616,046 - 125,620,931 (-)	NCBI
NHGRI_mPanPan1	11	126,720,937 - 126,725,825 (-)	NCBI
Mhudiblu_PPA_v0	11	119,747,611 - 119,752,492 (-)	NCBI

RefSeq Acc Id:

XM_063608299 ⟹ XP_063464369

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	9	125,616,046 - 125,632,493 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_024786722	(Get FASTA)	NCBI Sequence Viewer
	XP_034789855	(Get FASTA)	NCBI Sequence Viewer
	XP_034789859	(Get FASTA)	NCBI Sequence Viewer
	XP_063464369	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000027973.1

RefSeq Acc Id:	XP_024786722 ⟸ XM_024930954
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R9BFJ0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKRERGALSRASRALRLAPFVYLLLIQTDPLEGVNITSPVRLIHGTVGKSALLSVQYSSTSSDR PVVKWQLKRDKPVTVVQSIGTEVIGTLRPDYRDRIRLFENGSLLLSDLQLADEGTYEVEISITD DTFTGEKTINLTVDVPISRPQVLVASTTVLELSEAFTLNCSHENGTKPSYTWLKDGKPLLNDSR MLLSPDQKVLTITRVLMEDDDLYSCVVENPISQGRSLPVKITVYRRSSLYIILSTGGIFLLVTL VTVCACWKPSKRKQKKLEKQNSLEYMDQNDDRLKPEADTLPRSGEQERKNPMALYILKDKDSPE TEENPAPEPRSVTEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSRSASRTLRTA GVHIIREQDEAGPVEISA hide sequence

RefSeq Acc Id:	XP_034789855 ⟸ XM_034933964
- Peptide Label:	isoform X1
- UniProtKB:	A0A2R9BFJ0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_034789859 ⟸ XM_034933968
- Peptide Label:	isoform X4

RefSeq Acc Id:

ENSPPAP00000027973 ⟸ ENSPPAT00000050816

RefSeq Acc Id:	XP_063464369 ⟸ XM_063608299
- Peptide Label:	isoform X3

Protein Domains

Ig-like

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000037050	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000050816.1	UniProtKB/TrEMBL
Gene3D-CATH	2.60.40.10	UniProtKB/TrEMBL
InterPro	Ig-like_dom	UniProtKB/TrEMBL
	Ig-like_dom_sf	UniProtKB/TrEMBL
	Ig-like_fold	UniProtKB/TrEMBL
	Ig_sub	UniProtKB/TrEMBL
	Ig_sub2	UniProtKB/TrEMBL
	Ig_V-set	UniProtKB/TrEMBL
NCBI Gene	HEPACAM	ENTREZGENE
PANTHER	HEPACAM FAMILY MEMBER 2-RELATED	UniProtKB/TrEMBL
	IG-LIKE DOMAIN-CONTAINING PROTEIN	UniProtKB/TrEMBL
Pfam	Ig_3	UniProtKB/TrEMBL
	V-set	UniProtKB/TrEMBL
PROSITE	IG_LIKE	UniProtKB/TrEMBL
SMART	IGc2	UniProtKB/TrEMBL
	SM00409	UniProtKB/TrEMBL
Superfamily-SCOP	SSF48726	UniProtKB/TrEMBL
UniProt	A0A2R9BFJ0	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM