B4GALT5 (beta-1,4-galactosyltransferase 5) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: B4GALT5 (beta-1,4-galactosyltransferase 5) Pan paniscus
Analyze
Symbol: B4GALT5
Name: beta-1,4-galactosyltransferase 5
RGD ID: 11688743
Description: ENCODES a protein that exhibits N-acetyllactosamine synthase activity (ortholog); UDP-galactose:glucosylceramide beta-1,4-galactosyltransferase activity (ortholog); INVOLVED IN central nervous system myelination (ortholog); central nervous system neuron axonogenesis (ortholog); ganglioside biosynthetic process via lactosylceramide (ortholog); ASSOCIATED WITH COVID-19 (ortholog); Experimental Liver Cirrhosis (ortholog); juvenile rheumatoid arthritis (ortholog); FOUND IN Golgi apparatus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12047,042,479 - 47,123,209 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2047,041,469 - 47,123,214 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02045,977,801 - 46,058,429 (-)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
B4GALT5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12047,042,479 - 47,123,209 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2047,041,469 - 47,123,214 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02045,977,801 - 46,058,429 (-)NCBIMhudiblu_PPA_v0panPan3
B4GALT5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2049,632,945 - 49,713,878 (-)EnsemblGRCh38hg38GRCh38
GRCh382049,632,945 - 49,713,878 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh372048,249,482 - 48,330,415 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362047,682,889 - 47,763,745 (-)NCBINCBI36hg18NCBI36
Build 342047,682,888 - 47,763,745NCBI
Celera2044,954,098 - 45,035,021 (-)NCBI
Cytogenetic Map20q13.13NCBI
HuRef2044,998,184 - 45,021,953 (-)NCBIHuRef
CHM1_12048,154,191 - 48,235,100 (-)NCBICHM1_1
B4galt5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392167,140,364 - 167,191,155 (-)NCBIGRCm39mm39
GRCm39 Ensembl2167,140,364 - 167,191,103 (-)Ensembl
GRCm382167,298,444 - 167,349,178 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2167,298,444 - 167,349,183 (-)EnsemblGRCm38mm10GRCm38
MGSCv372167,123,944 - 167,174,678 (-)NCBIGRCm37mm9NCBIm37
MGSCv362166,992,266 - 167,040,388 (-)NCBImm8
Celera2173,239,050 - 173,289,822 (-)NCBICelera
Cytogenetic Map2H3NCBI
B4galt5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23156,018,056 - 156,033,983 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl3156,018,053 - 156,070,074 (-)Ensembl
Rnor_6.03164,039,731 - 164,055,561 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3164,039,731 - 164,095,878 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03170,196,325 - 170,211,612 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43158,440,189 - 158,449,419 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.13158,349,006 - 158,397,606 (-)NCBI
Celera3154,599,548 - 154,615,476 (-)NCBICelera
Cytogenetic Map3q42NCBI
B4galt5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554458,534,220 - 8,559,672 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554458,471,684 - 8,559,672 (+)NCBIChiLan1.0ChiLan1.0
B4GALT5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12436,220,973 - 36,241,482 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2436,221,189 - 36,300,804 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2435,462,952 - 35,538,860 (-)NCBI
ROS_Cfam_1.02436,925,343 - 37,001,298 (-)NCBI
UMICH_Zoey_3.12436,166,534 - 36,242,395 (-)NCBI
UNSW_CanFamBas_1.02436,303,207 - 36,376,262 (-)NCBI
UU_Cfam_GSD_1.02436,842,820 - 36,918,775 (-)NCBI
B4galt5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640189,221,713 - 189,282,986 (+)NCBI
SpeTri2.0NW_0049365144,719,198 - 4,736,638 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
B4GALT5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1751,259,786 - 51,356,803 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11751,257,273 - 51,334,566 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21757,578,640 - 57,655,502 (-)NCBISscrofa10.2Sscrofa10.2susScr3
B4GALT5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1214,270,945 - 14,357,052 (+)NCBI
ChlSab1.1 Ensembl214,271,141 - 14,354,159 (+)Ensembl
Vero_WHO_p1.0NW_02366605062,756,661 - 62,840,309 (+)NCBI
B4galt5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247905,770,586 - 5,792,036 (+)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008961466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide SSBP01000203 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000035534   ⟹   ENSPPAP00000012867
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2047,041,469 - 47,066,128 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000035539   ⟹   ENSPPAP00000012872
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2047,045,839 - 47,123,214 (-)Ensembl
RefSeq Acc Id: XM_008961466   ⟹   XP_008959714
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.12047,042,479 - 47,123,209 (-)NCBI
Mhudiblu_PPA_v02045,977,801 - 46,058,429 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008959714 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_008959714   ⟸   XM_008961466
- Sequence:
RefSeq Acc Id: ENSPPAP00000012872   ⟸   ENSPPAT00000035539
RefSeq Acc Id: ENSPPAP00000012867   ⟸   ENSPPAT00000035534


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000029604 Ensembl, ENTREZGENE
NCBI Gene B4GALT5 ENTREZGENE