MTCL1 (microtubule crosslinking factor 1) - Rat Genome Database
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Gene: MTCL1 (microtubule crosslinking factor 1) Pan paniscus
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Symbol: MTCL1
Name: microtubule crosslinking factor 1
RGD ID: 11688298
Description: ENCODES a protein that exhibits microtubule binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN establishment or maintenance of epithelial cell apical/basal polarity (ortholog); microtubule bundle formation (ortholog); positive regulation of microtubule motor activity (ortholog); ASSOCIATED WITH chronic obstructive pulmonary disease (ortholog); FOUND IN apicolateral plasma membrane (ortholog); cytoskeleton (ortholog); lateral plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: microtubule cross-linking factor 1; SOGA family member 2; SOGA2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1187,734,076 - 7,906,953 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl187,737,903 - 7,906,958 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0185,454,320 - 5,580,020 (-)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
MTCL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1187,734,076 - 7,906,953 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl187,737,903 - 7,906,958 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0185,454,320 - 5,580,020 (-)NCBIMhudiblu_PPA_v0panPan3
MTCL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl188,705,661 - 8,832,778 (+)EnsemblGRCh38hg38GRCh38
GRCh38188,705,556 - 8,832,778 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37188,705,554 - 8,832,776 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36188,707,369 - 8,822,074 (+)NCBINCBI36hg18NCBI36
Celera188,601,536 - 8,716,876 (+)NCBI
Cytogenetic Map18p11.22NCBI
HuRef188,681,428 - 8,796,763 (+)NCBIHuRef
CHM1_1188,717,549 - 8,832,980 (+)NCBICHM1_1
Mtcl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391766,643,975 - 66,760,672 (-)NCBIGRCm39mm39
GRCm39 Ensembl1766,643,977 - 66,756,745 (-)Ensembl
GRCm381766,336,980 - 66,449,806 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1766,336,982 - 66,449,750 (-)EnsemblGRCm38mm10GRCm38
MGSCv371766,686,322 - 66,799,090 (-)NCBIGRCm37mm9NCBIm37
MGSCv361766,241,933 - 66,290,855 (-)NCBImm8
Celera1770,637,666 - 70,750,457 (-)NCBICelera
Cytogenetic Map17E1.1NCBI
Mtcl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.29106,305,282 - 106,441,782 (-)NCBI
Rnor_6.0 Ensembl9114,491,419 - 114,619,711 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.09114,493,901 - 114,632,632 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.09113,981,913 - 114,136,747 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.49105,456,824 - 105,574,076 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.19105,636,246 - 105,783,556 (-)NCBI
Celera9103,496,748 - 103,614,716 (-)NCBICelera
Cytogenetic Map9q37NCBI
Mtcl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554022,979,547 - 3,076,283 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554022,980,539 - 3,076,283 (-)NCBIChiLan1.0ChiLan1.0
MTCL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl774,840,032 - 74,967,305 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1774,840,271 - 74,967,849 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Mtcl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049366702,388,839 - 2,516,758 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MTCL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl699,062,354 - 99,177,958 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1699,062,347 - 99,178,570 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2692,351,813 - 92,452,978 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MTCL1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11867,666,982 - 67,792,792 (+)NCBI
ChlSab1.1 Ensembl1867,667,690 - 67,788,981 (+)Ensembl
Mtcl1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462477017,702,793 - 17,788,861 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000046372   ⟹   ENSPPAP00000023547
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl187,737,903 - 7,906,958 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000046374   ⟹   ENSPPAP00000023549
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl187,737,903 - 7,896,118 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000046379   ⟹   ENSPPAP00000023554
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl187,770,472 - 7,783,189 (-)Ensembl
RefSeq Acc Id: XM_008961559   ⟹   XP_008959807
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1187,734,076 - 7,906,698 (-)NCBI
Mhudiblu_PPA_v0185,454,320 - 5,580,020 (-)NCBI
Sequence:
RefSeq Acc Id: XM_024926314   ⟹   XP_024782082
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1187,734,076 - 7,906,698 (-)NCBI
Mhudiblu_PPA_v0185,454,320 - 5,580,020 (-)NCBI
Sequence:
RefSeq Acc Id: XM_024926316   ⟹   XP_024782084
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1187,734,076 - 7,906,698 (-)NCBI
Mhudiblu_PPA_v0185,454,320 - 5,580,020 (-)NCBI
Sequence:
RefSeq Acc Id: XM_024926317   ⟹   XP_024782085
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1187,734,076 - 7,906,953 (-)NCBI
Mhudiblu_PPA_v0185,454,320 - 5,580,020 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034943593   ⟹   XP_034799484
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0185,454,320 - 5,580,020 (-)NCBI
RefSeq Acc Id: XM_034943594   ⟹   XP_034799485
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0185,454,320 - 5,580,020 (-)NCBI
RefSeq Acc Id: XM_034943595   ⟹   XP_034799486
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0185,455,360 - 5,580,020 (-)NCBI
RefSeq Acc Id: XM_034943596   ⟹   XP_034799487
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0185,454,320 - 5,580,020 (-)NCBI
RefSeq Acc Id: XM_034943597   ⟹   XP_034799488
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0185,454,320 - 5,572,770 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_008959807   ⟸   XM_008961559
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_024782085   ⟸   XM_024926317
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_024782084   ⟸   XM_024926316
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_024782082   ⟸   XM_024926314
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_034799487   ⟸   XM_034943596
- Peptide Label: isoform X6
RefSeq Acc Id: XP_034799485   ⟸   XM_034943594
- Peptide Label: isoform X4
RefSeq Acc Id: XP_034799484   ⟸   XM_034943593
- Peptide Label: isoform X3
RefSeq Acc Id: XP_034799488   ⟸   XM_034943597
- Peptide Label: isoform X9
RefSeq Acc Id: XP_034799486   ⟸   XM_034943595
- Peptide Label: isoform X5
RefSeq Acc Id: ENSPPAP00000023547   ⟸   ENSPPAT00000046372
RefSeq Acc Id: ENSPPAP00000023549   ⟸   ENSPPAT00000046374
RefSeq Acc Id: ENSPPAP00000023554   ⟸   ENSPPAT00000046379
Protein Domains
DUF4482


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000034933 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000023547 UniProtKB/TrEMBL
  ENSPPAP00000023549 UniProtKB/TrEMBL
  ENSPPAP00000023554 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000046372 UniProtKB/TrEMBL
  ENSPPAT00000046374 UniProtKB/TrEMBL
  ENSPPAT00000046379 UniProtKB/TrEMBL
InterPro DUF4482 UniProtKB/TrEMBL
  SOGA UniProtKB/TrEMBL
NCBI Gene MTCL1 ENTREZGENE
Pfam DUF4482 UniProtKB/TrEMBL
  SOGA UniProtKB/TrEMBL
UniProt A0A2R9B3J0_PANPA UniProtKB/TrEMBL
  A0A2R9B3J5_PANPA UniProtKB/TrEMBL
  A0A2R9B8F5_PANPA UniProtKB/TrEMBL