RELL1 (RELT like 1) - Rat Genome Database

Name: RELL1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: RELL1 (RELT like 1) Pan paniscus

Analyze

Symbol:

RELL1

Name:

RELT like 1

RGD ID:

11686698

Description:

INVOLVED IN positive regulation of p38MAPK cascade (inferred); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); genetic disease (ortholog); FOUND IN membrane (inferred); microtubule cytoskeleton (inferred); plasma membrane (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

RELT-like protein 1

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RELL1 (RELT like 1)	NCBI	Ortholog
Mus musculus (house mouse):	Rell1 (RELT-like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Rell1 (RELT-like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Rell1 (RELT like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RELL1 (RELT like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rell1 (RELT like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RELL1 (RELT like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RELL1 (RELT like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rell1 (RELT like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	37,799,868 - 37,873,862 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	37,992,302 - 38,066,195 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	31,939,962 - 32,013,856 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	37,798,632 - 37,869,421 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	37,798,632 - 37,869,421 (-)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Experimental Liver Cirrhosis (ISO)

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

positive regulation of p38MAPK cascade (IEA)

Cellular Component

membrane (IEA)

microtubule cytoskeleton (IEA)

plasma membrane (IEA)

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

RELL1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	37,799,868 - 37,873,862 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	37,992,302 - 38,066,195 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	31,939,962 - 32,013,856 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	37,798,632 - 37,869,421 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	37,798,632 - 37,869,421 (-)	Ensembl	panpan1.1		panPan2

RELL1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	37,586,304 - 37,686,376 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	37,590,800 - 37,686,376 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	4	37,592,426 - 37,687,998 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	37,268,817 - 37,364,394 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	4	38,031,897 - 38,127,507 (-)	NCBI		Celera
Cytogenetic Map	4	p14	NCBI
HuRef	4	36,916,955 - 37,012,394 (-)	NCBI		HuRef
CHM1_1	4	37,591,419 - 37,687,547 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	4	37,559,941 - 37,655,575 (-)	NCBI		T2T-CHM13v2.0

Rell1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	64,047,296 - 64,126,165 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	64,066,240 - 64,126,240 (-)	Ensembl		GRCm39 Ensembl
GRCm38	5	63,889,337 - 63,969,020 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	63,908,897 - 63,968,897 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	64,300,137 - 64,360,136 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	64,188,667 - 64,248,001 (-)	NCBI		MGSCv36	mm8
Celera	5	61,200,867 - 61,260,171 (-)	NCBI		Celera
Cytogenetic Map	5	C3.1	NCBI
cM Map	5	32.8	NCBI

Rell1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	44,672,121 - 44,732,081 (+)	NCBI		GRCr8
mRatBN7.2	14	44,318,640 - 44,378,541 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	44,303,009 - 44,378,500 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	14	44,681,475 - 44,730,263 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	45,981,404 - 46,030,193 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	44,461,557 - 44,510,341 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	45,982,244 - 46,041,907 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	45,982,244 - 46,041,866 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	45,787,180 - 45,847,126 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	47,179,973 - 47,229,627 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	14	47,185,966 - 47,200,193 (-)	NCBI
Celera	14	43,460,106 - 43,515,377 (+)	NCBI		Celera
Cytogenetic Map	14	p11	NCBI

Rell1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955443	9,460,682 - 9,526,986 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955443	9,461,570 - 9,526,986 (+)	NCBI	ChiLan1.0	ChiLan1.0

RELL1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	3	74,493,133 - 74,555,976 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	3	74,489,571 - 74,554,086 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	3	77,040,360 - 77,103,166 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	3	75,274,403 - 75,336,739 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	3	74,540,353 - 74,603,128 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	3	74,687,392 - 74,750,146 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	3	75,065,069 - 75,128,089 (+)	NCBI		UU_Cfam_GSD_1.0

Rell1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405285	40,602,899 - 40,670,798 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936482	5,625,349 - 5,695,360 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936482	5,626,563 - 5,695,320 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RELL1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	29,118,514 - 29,190,565 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	8	29,118,511 - 29,190,591 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	30,533,593 - 30,568,840 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RELL1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	27	12,602,526 - 12,673,000 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	27	12,602,540 - 12,676,013 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666047	59,017,806 - 59,097,774 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rell1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624840	6,207,394 - 6,268,205 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624840	6,207,560 - 6,268,193 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_008957556	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSPPAT00000037284 ⟹ ENSPPAP00000014597

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	4	37,798,632 - 37,869,421 (-)	Ensembl

RefSeq Acc Id:

XM_008957556 ⟹ XP_008955804

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	3	37,799,868 - 37,873,862 (-)	NCBI
NHGRI_mPanPan1	4	37,992,302 - 38,066,195 (-)	NCBI
Mhudiblu_PPA_v0	4	31,939,962 - 32,013,856 (-)	NCBI
PanPan1.1	4	37,798,632 - 37,869,421 (-)	NCBI

Sequence:

show sequence

CGCCGCTCCCTGGGGCCCAGCCCAGCCACTCGATCAGCCCGCCGGCTCCGGAGCGGCACTGCCT
TCCCGAGCGCGGGACGCGGCGCCCTGGGGAGGAGGGCGAAGCGACGCGGCGATGGCTCCGCGGG
CGCTCCCGGGGTCCGCCGTCCTAGCCGCTGCTGTCTTCGTGGGAGGCGCCGTGAGTTCGCCGCT
GGTGGCTCCGGACAATGGGAGCAGCCGCACATTGCACTCCAGAACAGAGACGACCCCATCACCC
AGCAACGATACTGGGAATGGACACCCAGAATATATTGCATACGCGCTTGTCCCTGTGTTCTTTA
TCATGGGTCTCTTTGGCGTCCTCATTTGCCACCTGCTTAAGAAGAAAGGCTATCGTTGTACAAC
AGAAGCAGAGCAAGATATCGAAGAGGAAAAGGTTGAAAAGATAGAATTGAACGACAGTGTGAAT
GAAAACAGTGACACTGTTGGGCAAATCGTCCACTACATCATGAAAAATGAAGCGAATGCTGATG
TCTTAAAGGCGATGGTAGCAGATAACAGCCTGTATGATCCTGAAAGCCCCGTGACCCCCAGCAC
ACCAGGGAGCCCGCCAGTGAGTCCTGGGCCTTTGTCACCAGGGGGGACGCCAGGGAAGCACGTC
TGTGGCCATCATCTGCATACGGTGGGCGGTGTTGTCGAGAGGGATGTGTGTCATCGGTGTAGGC
ACAAGCGGTGGCACTTTATAAAGCCCACTAACAAGTCCAGAGAGAGCAGACCACGGCGCCAAGG
CGAGGTCACGGTCCTTTCTGTTGGCAGGTTTAGAGTTACAAAAGTGGAGCACAAGTCAAACCAG
AAGGAACGGAGAAGCCTGATGTCTGTTAGTGGGGCTGAAACCGTCAATGGGGAGGTGCCGGCAA
CACCTGTGAAGAGAGAACGCAGTGGCACAGAGTAGCAGCAATGACTTGACTTGAAGAGCTCTAA
GAGACTGAAAACTTATGTGAAGTTGCCTTGGGAATATTTTTATATATTTTATACAGTTTCTATC
ATGGAGTCAGCAGGCACGTGGAGAAAACCTAAAAGGGAATATTATTGCTGCGCCGTATACAGAA
TTCAGTTTGCTTTGAAACAAGTTTTGGTTGAAAGAGTCTGTTGAAAATTTTATTATACTTCCAG
GGAAGGAAAGAGCTGTTTTTATCTTCTTAACCACTCCCAGCCTCTACTCTTCCCAGCCCCTAAT
CCCAGGCCTTGGTGTACACACTGTAGTTTTTCCATTATGATGAGTATGTGCAGTGATACTATTC
ATGTACAGTCTGAGCTTATGCTCAGGGGTGTGTGTGTGTATATGTGTATACATATGTGCACGTG
AGTGTGTGTTTCTTTTTCCAGTTCCTGCATCCTATTTTGACACTGGTTGTAAGAAGATCTTGAT
ACATACAGGTTAGCTGTTACAAAAGATAAAAGATGAATCTTCAGTGGTAAAAGCTCAGTGGAAA
TAATCTAGTTTAGCCCTGAGGAGTTGATTCCCCAAGGGACCATGGAGTCAGATGGGACCAGATG
CTAGACTTTGGATTCCTTGACCACAACTTCAGCATTAACTCCTGCCACCACCATGTCACTCCAC
AGCACTTACACAT

hide sequence

Protein Sequences


Protein RefSeqs	XP_008955804	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000014597.1

RefSeq Acc Id:

XP_008955804 ⟸ XM_008957556

- Sequence:

show sequence

MAPRALPGSAVLAAAVFVGGAVSSPLVAPDNGSSRTLHSRTETTPSPSNDTGNGHPEYIAYALV
PVFFIMGLFGVLICHLLKKKGYRCTTEAEQDIEEEKVEKIELNDSVNENSDTVGQIVHYIMKNE
ANADVLKAMVADNSLYDPESPVTPSTPGSPPVSPGPLSPGGTPGKHVCGHHLHTVGGVVERDVC
HRCRHKRWHFIKPTNKSRESRPRRQGEVTVLSVGRFRVTKVEHKSNQKERRSLMSVSGAETVNG
EVPATPVKRERSGTE

hide sequence

RefSeq Acc Id:

ENSPPAP00000014597 ⟸ ENSPPAT00000037284

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000030468	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000037284.1	UniProtKB/TrEMBL
InterPro	RELL1	UniProtKB/TrEMBL
	TNF_rcpt_RELT	UniProtKB/TrEMBL
KEGG Report	pps:100992767	UniProtKB/TrEMBL
NCBI Gene	RELL1	ENTREZGENE
PANTHER	PTHR31037	UniProtKB/TrEMBL
	RELT-LIKE PROTEIN 1	UniProtKB/TrEMBL
Pfam	RELT	UniProtKB/TrEMBL
UniProt	A0A2R9AH43_PANPA	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD