ARPC1B (actin related protein 2/3 complex subunit 1B) - Rat Genome Database

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Gene: ARPC1B (actin related protein 2/3 complex subunit 1B) Pan paniscus
Analyze
Symbol: ARPC1B
Name: actin related protein 2/3 complex subunit 1B
RGD ID: 11685653
Description: ENCODES a protein that exhibits actin filament binding (ortholog); protein-containing complex binding (ortholog); INVOLVED IN response to estradiol (ortholog); response to estrogen (ortholog); PARTICIPATES IN insulin responsive facilitative sugar transporter mediated glucose transport pathway; platelet-derived growth factor signaling pathway; Rab family mediated signaling pathway; ASSOCIATED WITH combined immunodeficiency (ortholog); Experimental Liver Cirrhosis (ortholog); gastritis (ortholog); FOUND IN tubulobulbar complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: actin-related protein 2/3 complex subunit 1B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26117,231,895 - 117,252,410 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17165,496,564 - 165,517,159 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0791,348,120 - 91,368,299 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17104,861,582 - 104,870,382 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7104,861,582 - 104,870,369 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ARPC1B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26117,231,895 - 117,252,410 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17165,496,564 - 165,517,159 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0791,348,120 - 91,368,299 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17104,861,582 - 104,870,382 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7104,861,582 - 104,870,369 (+)Ensemblpanpan1.1panPan2
ARPC1B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38799,374,259 - 99,394,816 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl799,374,249 - 99,394,816 (+)EnsemblGRCh38hg38GRCh38
GRCh37798,972,353 - 98,992,439 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36798,810,265 - 98,830,360 (+)NCBINCBI36Build 36hg18NCBI36
Build 34798,616,979 - 98,637,053NCBI
Celera793,706,528 - 93,726,623 (+)NCBICelera
Cytogenetic Map7q22.1NCBI
HuRef793,608,035 - 93,628,135 (+)NCBIHuRef
CHM1_1798,902,377 - 98,922,501 (+)NCBICHM1_1
T2T-CHM13v2.07100,610,955 - 100,633,717 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2798,332,071 - 98,352,197 (+)NCBI
Arpc1b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395145,051,066 - 145,064,996 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5145,051,025 - 145,067,515 (+)EnsemblGRCm39 Ensembl
GRCm385145,114,256 - 145,128,186 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5145,114,215 - 145,130,705 (+)EnsemblGRCm38mm10GRCm38
MGSCv375145,875,125 - 145,889,055 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365145,367,857 - 145,381,713 (+)NCBIMGSCv36mm8
Celera5142,106,218 - 142,120,149 (+)NCBICelera
Cytogenetic Map5G2NCBI
cM Map585.03NCBI
Arpc1b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81214,595,939 - 14,609,501 (-)NCBIGRCr8
mRatBN7.2129,482,176 - 9,495,772 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl129,480,831 - 9,495,747 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1210,286,931 - 10,300,462 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01210,910,133 - 10,923,665 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0129,933,561 - 9,947,093 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01211,252,300 - 11,265,849 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1211,252,296 - 11,265,865 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01213,321,403 - 13,334,951 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4129,796,269 - 9,803,639 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1129,826,196 - 9,833,567 (-)NCBI
Celera1211,287,122 - 11,300,659 (-)NCBICelera
Cytogenetic Map12p11NCBI
Arpc1b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546015,055,480 - 15,069,093 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546015,055,753 - 15,069,093 (+)NCBIChiLan1.0ChiLan1.0
ARPC1B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1610,192,299 - 10,198,383 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl610,178,462 - 10,198,309 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha611,819,059 - 11,832,117 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0610,192,483 - 10,205,575 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl610,134,810 - 10,205,481 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1610,062,441 - 10,075,520 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0610,040,965 - 10,054,042 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0610,274,762 - 10,287,831 (-)NCBIUU_Cfam_GSD_1.0
Arpc1b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344138,283,052 - 138,294,275 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367501,650,979 - 1,662,206 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367501,651,026 - 1,662,208 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARPC1B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl36,220,939 - 6,342,637 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.136,329,737 - 6,342,641 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.236,520,442 - 6,527,677 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ARPC1B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12813,764,637 - 13,780,317 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660702,517,817 - 2,538,868 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Arpc1b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474032,805,610 - 32,821,918 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474032,805,647 - 32,821,986 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000035209   ⟹   ENSPPAP00000012543
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl7104,861,582 - 104,870,369 (+)Ensembl
RefSeq Acc Id: XM_034964514   ⟹   XP_034820405
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v26117,231,895 - 117,252,410 (+)NCBI
NHGRI_mPanPan17165,496,564 - 165,517,159 (+)NCBI
Mhudiblu_PPA_v0791,348,120 - 91,368,299 (+)NCBI
RefSeq Acc Id: XM_063605985   ⟹   XP_063462055
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v26117,232,375 - 117,252,360 (+)NCBI
RefSeq Acc Id: XM_063605986   ⟹   XP_063462056
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v26117,231,958 - 117,252,360 (+)NCBI
RefSeq Acc Id: XM_063605987   ⟹   XP_063462057
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v26117,231,964 - 117,252,360 (+)NCBI
RefSeq Acc Id: XM_063605988   ⟹   XP_063462058
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v26117,232,376 - 117,252,360 (+)NCBI
Protein Sequences
Protein RefSeqs XP_034820405 (Get FASTA)   NCBI Sequence Viewer  
  XP_063462055 (Get FASTA)   NCBI Sequence Viewer  
  XP_063462056 (Get FASTA)   NCBI Sequence Viewer  
  XP_063462057 (Get FASTA)   NCBI Sequence Viewer  
  XP_063462058 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000012543.1
Reference Protein Sequences
RefSeq Acc Id: XP_034820405   ⟸   XM_034964514
- UniProtKB: A0A2R9A5H5 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000012543   ⟸   ENSPPAT00000035209
RefSeq Acc Id: XP_063462056   ⟸   XM_063605986
- UniProtKB: A0A2R9A5H5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063462057   ⟸   XM_063605987
- UniProtKB: A0A2R9A5H5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063462055   ⟸   XM_063605985
- UniProtKB: A0A2R9A5H5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063462058   ⟸   XM_063605988
- UniProtKB: A0A2R9A5H5 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000029449 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000035209.1 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
InterPro ARPC1 UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
NCBI Gene ARPC1B ENTREZGENE
PANTHER PTHR10709 UniProtKB/TrEMBL
  PTHR10709:SF10 UniProtKB/TrEMBL
Pfam WD40 UniProtKB/TrEMBL
PIRSF ARP2/3_su1 UniProtKB/TrEMBL
PROSITE WD_REPEATS_2 UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/TrEMBL
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP SSF50978 UniProtKB/TrEMBL
UniProt A0A2R9A5H5 ENTREZGENE, UniProtKB/TrEMBL