ZNF19 (zinc finger protein 19) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: ZNF19 (zinc finger protein 19) Pan paniscus
Analyze
Symbol: ZNF19
Name: zinc finger protein 19
RGD ID: 11685607
Description: ENCODES a protein that exhibits DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); metal ion binding (inferred); INVOLVED IN regulation of DNA-templated transcription (inferred); regulation of transcription by RNA polymerase II (inferred); ASSOCIATED WITH autosomal dominant dyskeratosis congenita 6 (ortholog); genetic disease (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Chinchilla
Dog
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21882,674,848 - 82,698,855 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11688,605,786 - 88,632,409 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01653,446,172 - 53,550,302 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11671,311,879 - 71,401,991 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1671,311,879 - 71,326,419 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
ZNF19
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21882,674,848 - 82,698,855 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11688,605,786 - 88,632,409 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01653,446,172 - 53,550,302 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11671,311,879 - 71,401,991 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1671,311,879 - 71,326,419 (-)Ensemblpanpan1.1panPan2
ZNF19
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381671,473,583 - 71,489,324 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1671,464,555 - 71,565,089 (-)EnsemblGRCh38hg38GRCh38
GRCh371671,507,486 - 71,523,227 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361670,065,477 - 70,080,755 (-)NCBINCBI36Build 36hg18NCBI36
Build 341670,065,562 - 70,080,742NCBI
Celera1655,823,828 - 55,839,105 (-)NCBICelera
Cytogenetic Map16q22.2NCBI
HuRef1657,276,019 - 57,291,299 (-)NCBIHuRef
CHM1_11672,920,818 - 72,936,096 (-)NCBICHM1_1
T2T-CHM13v2.01677,290,801 - 77,306,540 (-)NCBIT2T-CHM13v2.0
Znf19
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554844,183,711 - 4,195,430 (-)NCBIChiLan1.0ChiLan1.0
ZNF19
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1577,264,728 - 77,282,307 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl577,271,298 - 77,280,048 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha577,226,642 - 77,325,592 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0577,703,595 - 77,803,039 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl577,710,375 - 77,719,214 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1577,524,013 - 77,623,132 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0577,347,115 - 77,364,691 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0577,846,023 - 77,863,597 (-)NCBIUU_Cfam_GSD_1.0
ZNF19
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1614,463,135 - 14,486,480 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2613,975,791 - 14,008,168 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF19
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1554,605,462 - 54,614,750 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604717,414,322 - 17,501,546 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000017604   ⟹   ENSPPAP00000003814
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1671,311,879 - 71,326,419 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000017627   ⟹   ENSPPAP00000003819
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1671,314,842 - 71,319,232 (-)Ensembl
RefSeq Acc Id: XM_055100255   ⟹   XP_054956230
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21882,675,707 - 82,685,975 (+)NCBI
NHGRI_mPanPan11688,605,935 - 88,618,907 (+)NCBI
RefSeq Acc Id: XM_063597735   ⟹   XP_063453805
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21882,674,848 - 82,685,975 (+)NCBI
RefSeq Acc Id: XR_008954933
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21882,674,870 - 82,698,855 (+)NCBI
NHGRI_mPanPan11688,605,786 - 88,632,409 (+)NCBI
RefSeq Acc Id: XR_008954934
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21882,677,219 - 82,695,997 (+)NCBI
NHGRI_mPanPan11688,608,148 - 88,629,550 (+)NCBI
RefSeq Acc Id: XR_010110291
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21882,674,870 - 82,698,855 (+)NCBI
Protein Sequences
Protein RefSeqs XP_054956230 (Get FASTA)   NCBI Sequence Viewer  
  XP_063453805 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000003814.1
  ENSPPAP00000003819.1
Reference Protein Sequences
RefSeq Acc Id: ENSPPAP00000003814   ⟸   ENSPPAT00000017604
RefSeq Acc Id: ENSPPAP00000003819   ⟸   ENSPPAT00000017627
RefSeq Acc Id: XP_054956230   ⟸   XM_055100255
RefSeq Acc Id: XP_063453805   ⟸   XM_063597735
Protein Domains
C2H2-type   KRAB


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000016077 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000017604.1 UniProtKB/TrEMBL
  ENSPPAT00000017627.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.140 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro KRAB UniProtKB/TrEMBL
  KRAB_dom_sf UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene ZNF19 ENTREZGENE
PANTHER KRAB DOMAIN C2H2 ZINC FINGER UniProtKB/TrEMBL
  KRAB DOMAIN-CONTAINING PROTEIN 5-RELATED UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 771 UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
PROSITE KRAB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART KRAB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF109640 UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A2R8ZG28_PANPA UniProtKB/TrEMBL
  A0A2R8ZG33_PANPA UniProtKB/TrEMBL