CNTROB (centrobin, centriole duplication and spindle assembly protein) - Rat Genome Database

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Gene: CNTROB (centrobin, centriole duplication and spindle assembly protein) Pan paniscus
Analyze
Symbol: CNTROB
Name: centrobin, centriole duplication and spindle assembly protein
RGD ID: 11683806
Description: ENCODES a protein that exhibits protein domain specific binding (inferred); INVOLVED IN centriole replication (inferred); centrosome separation (inferred); mitotic cytokinetic process (inferred); ASSOCIATED WITH common variable immunodeficiency (ortholog); cone-rod dystrophy 6 (ortholog); Diamond-Blackfan anemia (ortholog); FOUND IN centrosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: centrobin
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21915,530,146 - 15,546,805 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11717,496,297 - 17,512,824 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0177,967,297 - 7,983,743 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1177,953,617 - 7,970,148 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl177,953,660 - 7,970,148 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
centriole  (IEA)
centrosome  (IEA,ISO)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
CNTROB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21915,530,146 - 15,546,805 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11717,496,297 - 17,512,824 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0177,967,297 - 7,983,743 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1177,953,617 - 7,970,148 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl177,953,660 - 7,970,148 (+)Ensemblpanpan1.1panPan2
CNTROB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38177,932,081 - 7,949,920 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl177,932,101 - 7,949,920 (+)EnsemblGRCh38hg38GRCh38
GRCh37177,835,399 - 7,853,238 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36177,776,198 - 7,793,621 (+)NCBINCBI36Build 36hg18NCBI36
Celera177,863,187 - 7,880,713 (+)NCBICelera
Cytogenetic Map17p13.1NCBI
HuRef177,730,040 - 7,747,892 (+)NCBIHuRef
CHM1_1177,844,229 - 7,862,013 (+)NCBICHM1_1
T2T-CHM13v2.0177,837,509 - 7,855,338 (+)NCBIT2T-CHM13v2.0
Cntrob
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391169,188,735 - 69,214,720 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1169,190,313 - 69,214,601 (-)EnsemblGRCm39 Ensembl
GRCm381169,297,909 - 69,323,898 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1169,299,487 - 69,323,775 (-)EnsemblGRCm38mm10GRCm38
MGSCv371169,112,998 - 69,137,375 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361169,115,691 - 69,139,970 (-)NCBIMGSCv36mm8
Celera1176,253,419 - 76,277,856 (-)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1142.51NCBI
Cntrob
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81054,521,338 - 54,546,569 (-)NCBIGRCr8
mRatBN7.21054,022,523 - 54,047,793 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1054,022,852 - 54,044,849 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1058,684,543 - 58,706,468 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01058,173,159 - 58,195,082 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01053,681,256 - 53,703,227 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01055,901,929 - 55,927,121 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1055,901,901 - 55,924,158 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01055,644,004 - 55,666,957 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41056,094,489 - 56,116,421 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11056,108,146 - 56,129,842 (-)NCBI
Celera1053,179,449 - 53,201,359 (-)NCBICelera
Cytogenetic Map10q24NCBI
Cntrob
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554678,993,952 - 9,009,928 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554678,993,528 - 9,010,829 (-)NCBIChiLan1.0ChiLan1.0
CNTROB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1532,777,242 - 32,811,747 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl532,777,341 - 32,811,518 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha532,908,508 - 32,948,110 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0532,874,335 - 32,914,229 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl532,889,100 - 32,914,223 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1532,842,045 - 32,881,648 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0532,798,079 - 32,837,667 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0532,977,207 - 33,017,099 (+)NCBIUU_Cfam_GSD_1.0
Cntrob
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560247,700,460 - 47,716,775 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365951,175,562 - 1,191,222 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365951,174,559 - 1,191,171 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CNTROB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1253,181,642 - 53,201,667 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11253,181,096 - 53,201,670 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21255,532,441 - 55,602,642 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CNTROB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1167,320,557 - 7,337,746 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl167,320,586 - 7,338,369 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605914,070,347 - 14,087,586 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cntrob
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478610,514,609 - 10,532,563 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478610,514,593 - 10,532,661 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_024926083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024926085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024926091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034941481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034941482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034941483 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034941484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034941485 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034941486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034941487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034941488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034941489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055102011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055102012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055102013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055102014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055102015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_057300345 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063598940 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063598941 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063598942 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063598943 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063598944 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063598945 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063598946 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063598947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063598948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063598949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063598950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000048449   ⟹   ENSPPAP00000025620
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl177,953,660 - 7,970,148 (+)Ensembl
RefSeq Acc Id: XM_024926083   ⟹   XP_024781851
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21915,530,151 - 15,546,805 (+)NCBI
NHGRI_mPanPan11717,496,331 - 17,512,824 (+)NCBI
Mhudiblu_PPA_v0177,967,297 - 7,983,743 (+)NCBI
PanPan1.1177,953,617 - 7,970,148 (+)NCBI
Sequence:
RefSeq Acc Id: XM_024926085   ⟹   XP_024781853
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21915,530,153 - 15,546,805 (+)NCBI
NHGRI_mPanPan11717,496,343 - 17,512,824 (+)NCBI
Mhudiblu_PPA_v0177,967,297 - 7,983,743 (+)NCBI
PanPan1.1177,953,617 - 7,970,148 (+)NCBI
Sequence:
RefSeq Acc Id: XM_034941482   ⟹   XP_034797373
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21915,530,148 - 15,546,805 (+)NCBI
NHGRI_mPanPan11717,496,343 - 17,512,824 (+)NCBI
Mhudiblu_PPA_v0177,967,297 - 7,983,743 (+)NCBI
RefSeq Acc Id: XM_034941488   ⟹   XP_034797379
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21915,530,152 - 15,546,805 (+)NCBI
NHGRI_mPanPan11717,497,389 - 17,512,824 (+)NCBI
Mhudiblu_PPA_v0177,968,314 - 7,983,743 (+)NCBI
RefSeq Acc Id: XM_034941489   ⟹   XP_034797380
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21915,530,277 - 15,546,805 (+)NCBI
NHGRI_mPanPan11717,497,389 - 17,512,824 (+)NCBI
Mhudiblu_PPA_v0177,967,297 - 7,983,743 (+)NCBI
RefSeq Acc Id: XM_055102011   ⟹   XP_054957986
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21915,530,146 - 15,546,805 (+)NCBI
NHGRI_mPanPan11717,496,343 - 17,512,824 (+)NCBI
RefSeq Acc Id: XM_055102012   ⟹   XP_054957987
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21915,530,148 - 15,546,805 (+)NCBI
NHGRI_mPanPan11717,496,297 - 17,512,824 (+)NCBI
RefSeq Acc Id: XM_055102013   ⟹   XP_054957988
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21915,530,148 - 15,546,805 (+)NCBI
NHGRI_mPanPan11717,496,317 - 17,512,824 (+)NCBI
RefSeq Acc Id: XM_055102014   ⟹   XP_054957989
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21915,530,275 - 15,546,805 (+)NCBI
NHGRI_mPanPan11717,496,373 - 17,512,824 (+)NCBI
RefSeq Acc Id: XM_055102015   ⟹   XP_054957990
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21915,533,183 - 15,546,805 (+)NCBI
NHGRI_mPanPan11717,499,190 - 17,512,824 (+)NCBI
RefSeq Acc Id: XM_057300345   ⟹   XP_057156328
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21915,533,183 - 15,546,805 (+)NCBI
NHGRI_mPanPan11717,499,190 - 17,512,824 (+)NCBI
RefSeq Acc Id: XM_063598940   ⟹   XP_063455010
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21915,530,148 - 15,546,805 (+)NCBI
RefSeq Acc Id: XM_063598941   ⟹   XP_063455011
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21915,530,148 - 15,546,805 (+)NCBI
RefSeq Acc Id: XM_063598942   ⟹   XP_063455012
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21915,530,151 - 15,546,805 (+)NCBI
RefSeq Acc Id: XM_063598943   ⟹   XP_063455013
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21915,530,151 - 15,546,805 (+)NCBI
RefSeq Acc Id: XM_063598944   ⟹   XP_063455014
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21915,530,153 - 15,546,805 (+)NCBI
RefSeq Acc Id: XM_063598945   ⟹   XP_063455015
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21915,530,153 - 15,546,805 (+)NCBI
RefSeq Acc Id: XM_063598946   ⟹   XP_063455016
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21915,530,146 - 15,546,805 (+)NCBI
RefSeq Acc Id: XM_063598947   ⟹   XP_063455017
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21915,530,148 - 15,546,805 (+)NCBI
RefSeq Acc Id: XM_063598948   ⟹   XP_063455018
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21915,530,148 - 15,546,805 (+)NCBI
RefSeq Acc Id: XM_063598949   ⟹   XP_063455019
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21915,530,148 - 15,546,805 (+)NCBI
RefSeq Acc Id: XM_063598950   ⟹   XP_063455020
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21915,530,148 - 15,546,805 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_024781851   ⟸   XM_024926083
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_024781853   ⟸   XM_024926085
- Peptide Label: isoform X3
- UniProtKB: A0A2R9BF30 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_034797380   ⟸   XM_034941489
- Peptide Label: isoform X9
RefSeq Acc Id: XP_034797373   ⟸   XM_034941482
- Peptide Label: isoform X1
RefSeq Acc Id: XP_034797379   ⟸   XM_034941488
- Peptide Label: isoform X7
RefSeq Acc Id: ENSPPAP00000025620   ⟸   ENSPPAT00000048449
RefSeq Acc Id: XP_054957987   ⟸   XM_055102012
- Peptide Label: isoform X5
RefSeq Acc Id: XP_054957988   ⟸   XM_055102013
- Peptide Label: isoform X6
RefSeq Acc Id: XP_054957986   ⟸   XM_055102011
- Peptide Label: isoform X4
RefSeq Acc Id: XP_054957989   ⟸   XM_055102014
- Peptide Label: isoform X8
RefSeq Acc Id: XP_054957990   ⟸   XM_055102015
- Peptide Label: isoform X10
RefSeq Acc Id: XP_057156328   ⟸   XM_057300345
- Peptide Label: isoform X11
RefSeq Acc Id: XP_063455016   ⟸   XM_063598946
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063455011   ⟸   XM_063598941
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063455018   ⟸   XM_063598948
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063455020   ⟸   XM_063598950
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063455010   ⟸   XM_063598940
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063455017   ⟸   XM_063598947
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063455019   ⟸   XM_063598949
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063455013   ⟸   XM_063598943
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063455012   ⟸   XM_063598942
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063455015   ⟸   XM_063598945
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063455014   ⟸   XM_063598944
- Peptide Label: isoform X3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000035938 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000048449.1 UniProtKB/TrEMBL
InterPro Centrobin UniProtKB/TrEMBL
NCBI Gene CNTROB ENTREZGENE
PANTHER CENTROBIN UniProtKB/TrEMBL
  PTHR34439 UniProtKB/TrEMBL
UniProt A0A2R9BF30 ENTREZGENE, UniProtKB/TrEMBL