TAFA1 (TAFA chemokine like family member 1) - Rat Genome Database

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Gene: TAFA1 (TAFA chemokine like family member 1) Pan paniscus
Analyze
Symbol: TAFA1
Name: TAFA chemokine like family member 1
RGD ID: 11683392
Description: ENCODES a protein that exhibits receptor ligand activity (ortholog); INVOLVED IN neuroblast differentiation (ortholog); regulation of neuroblast proliferation (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN endoplasmic reticulum (ortholog); extracellular space (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: chemokine-like protein TAFA-1; FAM19A1; family with sequence similarity 19 member A1, C-C motif chemokine like
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2267,945,382 - 68,491,103 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1367,950,168 - 68,495,891 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0367,912,677 - 68,473,580 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1369,280,748 - 69,839,243 (+)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
TAFA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2267,945,382 - 68,491,103 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1367,950,168 - 68,495,891 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0367,912,677 - 68,473,580 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1369,280,748 - 69,839,243 (+)NCBIpanpan1.1PanPan1.1panPan2
TAFA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38367,991,544 - 68,545,621 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl368,004,247 - 68,545,621 (+)EnsemblGRCh38hg38GRCh38
GRCh37368,040,686 - 68,594,772 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36368,136,144 - 68,677,462 (+)NCBINCBI36Build 36hg18NCBI36
Build 34368,136,143 - 68,677,459NCBI
Celera367,995,186 - 68,536,291 (+)NCBICelera
Cytogenetic Map3p14.1NCBI
HuRef368,056,132 - 68,609,109 (+)NCBIHuRef
CHM1_1367,992,001 - 68,546,115 (+)NCBICHM1_1
T2T-CHM13v2.0368,036,911 - 68,591,152 (+)NCBIT2T-CHM13v2.0
Tafa1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39696,090,135 - 96,634,169 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl696,090,135 - 96,634,159 (+)EnsemblGRCm39 Ensembl
GRCm38696,113,154 - 96,657,204 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl696,113,154 - 96,657,198 (+)EnsemblGRCm38mm10GRCm38
MGSCv37696,063,148 - 96,607,191 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36696,078,617 - 96,622,660 (+)NCBIMGSCv36mm8
Celera697,991,492 - 98,529,124 (+)NCBICelera
Cytogenetic Map6D3NCBI
cM Map644.67NCBI
Tafa1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84130,294,659 - 130,799,139 (+)NCBIGRCr8
mRatBN7.24128,738,028 - 129,244,223 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4128,739,313 - 129,243,777 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.04128,818,468 - 128,942,088 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04193,307,937 - 193,448,717 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.04193,279,249 - 193,279,417 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44131,051,719 - 131,171,835 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4117,631,927 - 118,134,564 (+)NCBICelera
Cytogenetic Map4q34NCBI
Tafa1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542119,250,532 - 19,732,542 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542119,249,435 - 19,734,903 (-)NCBIChiLan1.0ChiLan1.0
TAFA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12023,128,171 - 23,621,402 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2023,131,438 - 23,618,979 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2023,096,732 - 23,590,540 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02023,152,653 - 23,646,748 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2023,152,036 - 23,644,360 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12022,854,197 - 23,347,611 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02023,191,753 - 23,690,192 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02023,254,295 - 23,750,018 (-)NCBIUU_Cfam_GSD_1.0
TAFA1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1349,444,674 - 49,968,598 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11349,443,726 - 49,970,760 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21354,878,399 - 55,001,259 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TAFA1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12229,016,689 - 29,572,632 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666041137,220,687 - 137,778,064 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tafa1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247732,536,833 - 3,029,402 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247732,534,592 - 3,032,084 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_003811589   ⟹   XP_003811637
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2267,945,390 - 68,491,103 (+)NCBI
NHGRI_mPanPan1367,950,177 - 68,495,891 (+)NCBI
Mhudiblu_PPA_v0367,925,398 - 68,473,580 (+)NCBI
PanPan1.1369,293,402 - 69,839,243 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008963969   ⟹   XP_008962217
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2267,945,382 - 68,491,103 (+)NCBI
NHGRI_mPanPan1367,950,168 - 68,495,891 (+)NCBI
Mhudiblu_PPA_v0367,925,399 - 68,473,580 (+)NCBI
PanPan1.1369,293,402 - 69,839,243 (+)NCBI
Sequence:
RefSeq Acc Id: XM_034956856   ⟹   XP_034812747
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2267,945,388 - 68,491,103 (+)NCBI
NHGRI_mPanPan1367,950,173 - 68,495,891 (+)NCBI
Mhudiblu_PPA_v0367,925,402 - 68,473,580 (+)NCBI
Protein Sequences
Protein RefSeqs XP_003811637 (Get FASTA)   NCBI Sequence Viewer  
  XP_008962217 (Get FASTA)   NCBI Sequence Viewer  
  XP_034812747 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_003811637   ⟸   XM_003811589
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008962217   ⟸   XM_008963969
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_034812747   ⟸   XM_034956856
- Peptide Label: isoform X1


Additional Information

Database Acc Id Source(s)
NCBI Gene FAM19A1 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-01-22 TAFA1  TAFA chemokine like family member 1  FAM19A1  family with sequence similarity 19 member A1, C-C motif chemokine like  Symbol and/or name change 5135510 APPROVED