SRRD (SRR1 domain containing) - Rat Genome Database

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Gene: SRRD (SRR1 domain containing) Pan paniscus
Analyze
Symbol: SRRD
Name: SRR1 domain containing
RGD ID: 11681626
Description: INVOLVED IN regulation of circadian rhythm (ortholog); regulation of heme biosynthetic process (ortholog); FOUND IN cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12225,268,684 - 25,276,668 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2225,268,727 - 25,276,402 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0227,545,779 - 7,559,431 (+)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (ISO)

References

Genomics

Comparative Map Data
SRRD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12225,268,684 - 25,276,668 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2225,268,727 - 25,276,402 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0227,545,779 - 7,559,431 (+)NCBIMhudiblu_PPA_v0panPan3
SRRD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2226,483,877 - 26,494,658 (+)EnsemblGRCh38hg38GRCh38
GRCh382226,483,867 - 26,494,658 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh372226,879,843 - 26,890,624 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362225,209,850 - 25,217,904 (+)NCBINCBI36hg18NCBI36
Celera2210,683,724 - 10,691,766 (+)NCBI
Cytogenetic Map22q12.1NCBI
HuRef229,827,403 - 9,835,469 (+)NCBIHuRef
CHM1_12226,839,268 - 26,847,300 (+)NCBICHM1_1
Srrd
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395112,485,257 - 112,490,921 (-)NCBIGRCm39mm39
GRCm39 Ensembl5112,485,258 - 112,490,906 (-)Ensembl
GRCm385112,337,391 - 112,343,040 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5112,337,392 - 112,343,040 (-)EnsemblGRCm38mm10GRCm38
MGSCv375112,766,411 - 112,772,060 (-)NCBIGRCm37mm9NCBIm37
MGSCv365112,577,651 - 112,583,345 (-)NCBImm8
Celera5109,457,384 - 109,462,989 (-)NCBICelera
Cytogenetic Map5FNCBI
Srrd
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21244,294,675 - 44,300,287 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1244,294,271 - 44,300,287 (+)Ensembl
Rnor_6.01250,315,876 - 50,321,488 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1250,315,933 - 50,321,144 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01252,072,936 - 52,078,566 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41214,318,678 - 14,324,706 (-)ENTREZGENERGSC3.4rn4RGSC3.4
RGSC_v3.41914,318,678 - 14,324,706 (-)NCBIRGSC3.4rn4RGSC3.4
Celera1245,877,839 - 45,883,451 (+)NCBICelera
Cytogenetic Map12q16NCBI
Srrd
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554551,075,652 - 1,083,102 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554551,076,113 - 1,090,346 (+)NCBIChiLan1.0ChiLan1.0
SRRD
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12620,172,236 - 20,186,236 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2620,023,419 - 20,042,580 (+)NCBI
ROS_Cfam_1.02620,523,003 - 20,542,113 (+)NCBI
UMICH_Zoey_3.12620,239,596 - 20,258,852 (+)NCBI
UNSW_CanFamBas_1.02620,495,514 - 20,514,617 (+)NCBI
UU_Cfam_GSD_1.02620,564,925 - 20,584,442 (+)NCBI
Srrd
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118114,758,191 - 114,765,874 (-)NCBI
SpeTri2.0NW_0049366571,104,833 - 1,112,854 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SRRD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1444,073,636 - 44,096,954 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11444,073,562 - 44,097,998 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21446,953,473 - 46,977,031 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SRRD
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1199,387,861 - 9,396,219 (+)NCBI
ChlSab1.1 Ensembl199,387,648 - 9,395,955 (+)Ensembl
Vero_WHO_p1.0NW_023666045116,707,973 - 116,717,014 (-)NCBI
Srrd
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247473,033,705 - 3,041,667 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000050611   ⟹   ENSPPAP00000027768
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2225,268,727 - 25,276,402 (+)Ensembl
RefSeq Acc Id: XM_034948637   ⟹   XP_034804528
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0227,545,781 - 7,553,780 (+)NCBI
RefSeq Acc Id: XM_034948638   ⟹   XP_034804529
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0227,545,779 - 7,559,431 (+)NCBI
RefSeq Acc Id: XM_034948639   ⟹   XP_034804530
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0227,547,886 - 7,553,633 (+)NCBI
Protein Sequences
Protein RefSeqs XP_034804528 (Get FASTA)   NCBI Sequence Viewer  
  XP_034804529 (Get FASTA)   NCBI Sequence Viewer  
  XP_034804530 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_034804529   ⟸   XM_034948638
- Peptide Label: isoform X2
RefSeq Acc Id: XP_034804528   ⟸   XM_034948637
- Peptide Label: isoform X1
RefSeq Acc Id: XP_034804530   ⟸   XM_034948639
- Peptide Label: isoform X3
RefSeq Acc Id: ENSPPAP00000027768   ⟸   ENSPPAT00000050611


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000036964 Ensembl, ENTREZGENE
NCBI Gene SRRD ENTREZGENE