PTMS (parathymosin) - Rat Genome Database

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Gene: PTMS (parathymosin) Pan paniscus
Analyze
Symbol: PTMS
Name: parathymosin
RGD ID: 11681375
Description: ENCODES a protein that exhibits zinc ion binding (ortholog); INVOLVED IN negative regulation of apoptotic process (inferred); positive regulation of transcription by RNA polymerase II (inferred); ASSOCIATED WITH genetic disease (ortholog); Hyperphosphatemic Familial Tumoral Calcinosis 1 (ortholog); lymphoproliferative syndrome 2 (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21012,328,728 - 12,333,544 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11212,325,525 - 12,330,302 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0126,897,502 - 6,902,257 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1126,810,493 - 6,815,611 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl126,814,264 - 6,815,101 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
PTMS
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21012,328,728 - 12,333,544 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11212,325,525 - 12,330,302 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0126,897,502 - 6,902,257 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1126,810,493 - 6,815,611 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl126,814,264 - 6,815,101 (+)Ensemblpanpan1.1panPan2
PTMS
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38126,766,363 - 6,770,952 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl126,765,516 - 6,770,952 (+)EnsemblGRCh38hg38GRCh38
GRCh37126,875,529 - 6,880,118 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36126,745,802 - 6,750,379 (+)NCBINCBI36Build 36hg18NCBI36
Build 34126,745,801 - 6,750,379NCBI
Celera128,492,838 - 8,497,415 (+)NCBICelera
Cytogenetic Map12p13.31NCBI
HuRef126,729,242 - 6,733,455 (+)NCBIHuRef
CHM1_1126,874,519 - 6,879,106 (+)NCBICHM1_1
T2T-CHM13v2.0126,775,928 - 6,780,518 (+)NCBIT2T-CHM13v2.0
Ptms
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396124,890,638 - 124,894,909 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6124,890,644 - 124,897,066 (-)EnsemblGRCm39 Ensembl
GRCm386124,913,675 - 124,917,946 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6124,913,681 - 124,920,103 (-)EnsemblGRCm38mm10GRCm38
MGSCv376124,863,693 - 124,867,964 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366124,879,300 - 124,883,550 (-)NCBIMGSCv36mm8
Celera6126,589,942 - 126,594,397 (-)NCBICelera
Cytogenetic Map6F2NCBI
cM Map659.17NCBI
Ptms
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84159,408,647 - 159,412,837 (-)NCBIGRCr8
mRatBN7.24157,722,384 - 157,726,575 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4157,722,386 - 157,727,009 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4163,950,670 - 163,954,849 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04159,733,590 - 159,737,769 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04158,368,995 - 158,373,192 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04157,435,371 - 157,439,507 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4157,435,373 - 157,439,507 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04224,453,139 - 224,457,327 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44161,041,242 - 161,045,145 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14161,286,177 - 161,290,081 (-)NCBI
Celera4146,459,663 - 146,463,891 (-)NCBICelera
Cytogenetic Map4q42NCBI
Ptms
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554134,376,955 - 4,377,759 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554134,376,955 - 4,378,253 (+)NCBIChiLan1.0ChiLan1.0
PTMS
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12738,268,296 - 38,284,921 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha278,343,963 - 8,348,328 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02738,620,956 - 38,625,320 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2738,620,978 - 38,625,228 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12738,494,931 - 38,499,300 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02738,536,172 - 38,540,542 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0277,823,193 - 7,827,558 (+)NCBIUU_Cfam_GSD_1.0
Ptms
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945102,381,897 - 102,384,048 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367091,049,964 - 1,050,769 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367091,049,455 - 1,050,892 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PTMS
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1563,937,092 - 63,942,112 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2566,371,522 - 66,376,336 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PTMS
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1116,803,143 - 6,807,896 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660631,415,987 - 1,420,828 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ptms
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248603,450,661 - 3,454,018 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248603,450,504 - 3,454,494 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000043535   ⟹   ENSPPAP00000020739
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl126,814,264 - 6,815,101 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000043540   ⟹   ENSPPAP00000020744
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl126,814,264 - 6,814,857 (+)Ensembl
RefSeq Acc Id: XM_034935244   ⟹   XP_034791135
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21012,328,733 - 12,333,544 (+)NCBI
NHGRI_mPanPan11212,325,525 - 12,330,302 (+)NCBI
Mhudiblu_PPA_v0126,897,502 - 6,902,257 (+)NCBI
RefSeq Acc Id: XM_063592967   ⟹   XP_063449037
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21012,328,728 - 12,332,790 (+)NCBI
Protein Sequences
Protein RefSeqs XP_034791135 (Get FASTA)   NCBI Sequence Viewer  
  XP_063449037 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000020739.1
  ENSPPAP00000020744.1
Reference Protein Sequences
RefSeq Acc Id: XP_034791135   ⟸   XM_034935244
- Peptide Label: isoform X1
RefSeq Acc Id: ENSPPAP00000020739   ⟸   ENSPPAT00000043535
RefSeq Acc Id: ENSPPAP00000020744   ⟸   ENSPPAT00000043540
RefSeq Acc Id: XP_063449037   ⟸   XM_063592967
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000033598 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000043535.1 UniProtKB/TrEMBL
  ENSPPAT00000043540.1 UniProtKB/TrEMBL
InterPro Pro/parathymosin UniProtKB/TrEMBL
NCBI Gene PTMS ENTREZGENE
PANTHER PARATHYMOSIN UniProtKB/TrEMBL
  PTHR22745 UniProtKB/TrEMBL
Pfam Prothymosin UniProtKB/TrEMBL
UniProt A0A2R9B042_PANPA UniProtKB/TrEMBL
  A0A2R9B047_PANPA UniProtKB/TrEMBL