PSMG4 (proteasome assembly chaperone 4)

Gene: PSMG4 (proteasome assembly chaperone 4) Pan paniscus

Analyze

Symbol:

PSMG4

Name:

proteasome assembly chaperone 4

RGD ID:

11680440

Description:

ENCODES a protein that exhibits protein-containing complex binding (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN protein-containing complex (ortholog)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	17,890,875 - 17,900,007 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	13,894,419 - 13,903,563 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	3,097,462 - 3,106,866 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	3,286,677 - 3,295,747 (+)	NCBI	panpan1.1	PanPan1.1	panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

protein-containing complex (ISO)

Molecular Function

protein binding (ISO)

protein-containing complex binding (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

PSMG4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	17,890,875 - 17,900,007 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	13,894,419 - 13,903,563 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	3,097,462 - 3,106,866 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	3,286,677 - 3,295,747 (+)	NCBI	panpan1.1	PanPan1.1	panPan2

PSMG4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	3,254,404 - 3,268,049 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	3,231,403 - 3,303,373 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	3,259,181 - 3,268,283 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	3,203,548 - 3,213,298 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	6	4,488,059 - 4,497,215 (+)	NCBI		Celera
Cytogenetic Map	6	p25.2	NCBI
HuRef	6	3,137,004 - 3,146,143 (+)	NCBI		HuRef
CHM1_1	6	3,261,618 - 3,270,777 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	6	3,123,453 - 3,136,452 (+)	NCBI		T2T-CHM13v2.0

Psmg4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	34,346,947 - 34,362,155 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	34,346,947 - 34,362,156 (+)	Ensembl		GRCm39 Ensembl
GRCm38	13	34,162,964 - 34,178,172 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	34,162,964 - 34,178,173 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	13	34,254,846 - 34,270,041 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	13	34,170,429 - 34,185,638 (+)	NCBI		MGSCv36	mm8
Celera	13	35,297,101 - 35,305,067 (+)	NCBI		Celera
Cytogenetic Map	13	A3.3	NCBI
cM Map	13	14.05	NCBI

Psmg4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	30,916,031 - 30,923,430 (-)	NCBI		GRCr8
mRatBN7.2	17	30,710,682 - 30,718,035 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	30,710,682 - 30,718,082 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	17	30,524,382 - 30,531,720 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	32,128,134 - 32,135,472 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	30,520,126 - 30,527,464 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	31,402,581 - 31,411,924 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	31,404,578 - 31,411,957 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	17	33,298,992 - 33,306,344 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	17	37,050,867 - 37,058,209 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	17	30,275,063 - 30,282,405 (-)	NCBI		Celera
Cytogenetic Map	17	p12	NCBI

Psmg4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955465	10,007,023 - 10,014,921 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955465	10,007,136 - 10,014,921 (-)	NCBI	ChiLan1.0	ChiLan1.0

PSMG4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	35	3,523,541 - 3,540,300 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	35	3,525,780 - 3,540,295 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	35	3,537,156 - 3,550,867 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	35	3,586,270 - 3,599,990 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	35	3,586,284 - 3,599,984 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	35	3,462,481 - 3,475,940 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	35	3,484,866 - 3,498,381 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	35	4,817,425 - 4,831,140 (+)	NCBI		UU_Cfam_GSD_1.0

Psmg4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	20,915,762 - 20,924,428 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936534	9,184,492 - 9,193,420 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936534	9,184,748 - 9,193,414 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PSMG4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	1,980,292 - 1,988,729 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	1,980,295 - 1,987,946 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	2,041,124 - 2,048,776 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PSMG4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	68,917,108 - 68,926,020 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	17	68,917,180 - 68,925,912 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666044	3,195,721 - 3,204,631 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Psmg4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624756	21,690,778 - 21,696,437 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624756	21,690,978 - 21,696,725 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003806700	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_003806701	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_003806700 ⟹ XP_003806748

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	5	17,890,883 - 17,900,007 (+)	NCBI
NHGRI_mPanPan1	6	13,894,427 - 13,903,563 (+)	NCBI
Mhudiblu_PPA_v0	6	3,097,471 - 3,106,866 (+)	NCBI
PanPan1.1	6	3,286,677 - 3,295,747 (+)	NCBI

Sequence:

show sequence

GCCTTTTCGGGGCCAAAAGCGAAAGCGCGCTCGGTCTCTCGGTGCTCGCTCCATCGGGTCTGGC
GGGGCTGGCAGCGGCGAGGACCCGGGTCTGGCGCTGTGGGCCGGGAGCCGTGGGGCGGCATGGA
GGGGCTGGTTGTCGCCGCCGGCGGGGACGTCTCCCTGCACAACTTCAGCGCGAGGCTGTGGGAG
CAGCTGGTCCACTTCCACGTCATGCGGCTGACGGACNNNNNNNNNNNNNNNNNNNNNCCTATCC
CCCTCGTGTGCCTTGCCTATCCCCTGTTGCGTGTCTCAGGCGCAACCTCGCCCGTGGCCATGTG
CAGCCGCTACGACTCCATCCCCGTGTCCACCTCCCTCCTTGGAGACACTTCCGACACGACCTCT
ACTGGCCTTGCCCAGCGCCTAGCCAGGAAGACCAACAAACAGGTGTTTGTCAGCTATAACCTTC
AGAACACAGACAGTAACTTCGCATTACTTGTAGAAAACAGGATCAAGGAAGAGATGGAGGCTTT
CCCCGAAAAGTTCTAGCTGAGTGGCAGAAGTGAGAATTTGTAAACTTATGTACAATGTATGTGT
AAATAAATGGATTGAATTTCAGTTTGTCATCAG

hide sequence

RefSeq Acc Id:

XM_003806701 ⟹ XP_003806749

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	5	17,890,875 - 17,900,007 (+)	NCBI
NHGRI_mPanPan1	6	13,894,419 - 13,903,563 (+)	NCBI
Mhudiblu_PPA_v0	6	3,097,462 - 3,106,866 (+)	NCBI
PanPan1.1	6	3,286,677 - 3,295,747 (+)	NCBI

Sequence:

show sequence

GCCTTTTCGGGGCCAAAAGCGAAAGCGCGCTCGGTCTCTCGGTGCTCGCTCCATCGGGTCTGGC
GGGGCTGGCAGCGGCGAGGACCCGGGTCTGGCGCTGTGGGCCGGGAGCCGTGGGGCGGCATGGA
GGGGCTGGTTGTCGCCGCCGGCGGGGACGTCTCCCTGCACAACTTCAGCGCGAGGCTGTGGGAG
CAGCTGGTCCACTTCCACGTCATGCGGCTGACGGACNNNNNNNNNNNNNNNNNNNNNCCTATCC
CCCTCGTGTGCCTTGCCTATCCCCTGTTGCGTGTCTCAGGCGCAACCTCGCCCGTGGCCATGTG
CAGCCGCTACGACTCCATCCCCGTGTCCACCTCCCTCCTTGGAGACACTTCCGACACGACCTCT
ACTGGCCTTGCCCAGCGCCTAGGGCTCGGAGGGAAGACTGGCCTGGCCTGTGAGTGTGGCGTAG
AGCGGGGATTAAGCAAAGGTCATGAGGCTGAATGCTCCACTCCTCCCACACCCCAACACACTTC
CTGTGGGCCAGCCAGGAAGACCAACAAACAGGTGTTTGTCAGCTATAACCTTCAGAACACAGAC
AGTAACTTCGCATTACTTGTAGAAAACAGGATCAAGGAAGAGATGGAGGCTTTCCCCGAAAAGT
TCTAGCTGAGTGGCAGAAGTGAGAATTTGTAAACTTATGTACAATGTATGTGTAAATAAATGGA
TTGAATTTCAGTTTGTCATCAG

hide sequence

Protein Sequences


Protein RefSeqs	XP_003806748	(Get FASTA)	NCBI Sequence Viewer
	XP_003806749	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_003806749 ⟸ XM_003806701
- Peptide Label:	isoform X1
- Sequence:	show sequence MEGLVVAAGGDVSLHNFSARLWEQLVHFHVMRLTDXXXXXXXPIPLVCLAYPLLRVSGATSPVA MCSRYDSIPVSTSLLGDTSDTTSTGLAQRLGLGGKTGLACECGVERGLSKGHEAECSTPPTPQH TSCGPARKTNKQVFVSYNLQNTDSNFALLVENRIKEEMEAFPEKF hide sequence

RefSeq Acc Id:	XP_003806748 ⟸ XM_003806700
- Peptide Label:	isoform X2
- Sequence:	show sequence MEGLVVAAGGDVSLHNFSARLWEQLVHFHVMRLTDXXXXXXXPIPLVCLAYPLLRVSGATSPVA MCSRYDSIPVSTSLLGDTSDTTSTGLAQRLARKTNKQVFVSYNLQNTDSNFALLVENRIKEEME AFPEKF hide sequence

Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	PSMG4	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar