HOMER1 (homer scaffold protein 1) - Rat Genome Database

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Gene: HOMER1 (homer scaffold protein 1) Pan paniscus
Analyze
Symbol: HOMER1
Name: homer scaffold protein 1
RGD ID: 11677918
Description: ENCODES a protein that exhibits identical protein binding (ortholog); molecular adaptor activity (ortholog); protein-containing complex binding (ortholog); INVOLVED IN behavioral response to cocaine (ortholog); circadian rhythm (ortholog); G protein-coupled glutamate receptor signaling pathway (ortholog); ASSOCIATED WITH Cocaine-Related Disorders (ortholog); Drug-Induced Dyskinesia (ortholog); Drug-Related Side Effects and Adverse Reactions (ortholog); FOUND IN dendrite (ortholog); dendritic shaft (ortholog); dendritic spine (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: homer homolog 1; homer protein homolog 1; homer scaffolding protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2435,785,689 - 35,926,708 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1533,939,170 - 34,080,335 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0535,794,627 - 35,936,111 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1536,065,045 - 36,205,928 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl536,064,665 - 36,205,928 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
HOMER1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2435,785,689 - 35,926,708 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1533,939,170 - 34,080,335 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0535,794,627 - 35,936,111 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1536,065,045 - 36,205,928 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl536,064,665 - 36,205,928 (+)Ensemblpanpan1.1panPan2
HOMER1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38579,372,636 - 79,514,134 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl579,372,636 - 79,514,134 (-)EnsemblGRCh38hg38GRCh38
GRCh37578,668,459 - 78,809,957 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36578,705,542 - 78,845,456 (-)NCBINCBI36Build 36hg18NCBI36
Build 34578,705,542 - 78,845,456NCBI
Celera574,569,550 - 74,709,526 (-)NCBICelera
Cytogenetic Map5q14.1NCBI
HuRef573,877,773 - 74,017,416 (-)NCBIHuRef
CHM1_1578,102,358 - 78,242,362 (-)NCBICHM1_1
T2T-CHM13v2.0579,856,812 - 79,998,313 (-)NCBIT2T-CHM13v2.0
Homer1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391393,440,265 - 93,549,471 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1393,436,143 - 93,541,637 (+)EnsemblGRCm39 Ensembl
GRCm381393,303,757 - 93,405,129 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1393,299,635 - 93,405,129 (+)EnsemblGRCm38mm10GRCm38
MGSCv371394,074,450 - 94,174,917 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361394,405,552 - 94,504,882 (+)NCBIMGSCv36mm8
Celera1396,912,321 - 97,012,695 (+)NCBICelera
Cytogenetic Map13C3NCBI
cM Map1347.83NCBI
Homer1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8226,279,012 - 26,388,279 (+)NCBIGRCr8
mRatBN7.2224,542,777 - 24,645,715 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl224,543,093 - 24,644,785 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx231,571,304 - 31,672,829 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0229,671,594 - 29,773,121 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0224,494,532 - 24,596,897 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0222,909,550 - 23,012,303 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl222,909,569 - 23,009,678 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0242,106,531 - 42,208,187 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera220,619,882 - 20,720,929 (+)NCBICelera
Cytogenetic Map2q12NCBI
Homer1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542521,644,571 - 21,775,735 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542521,644,577 - 21,774,843 (+)NCBIChiLan1.0ChiLan1.0
HOMER1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1327,395,337 - 27,525,822 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl327,400,839 - 27,523,320 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha328,635,060 - 28,765,722 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0327,314,347 - 27,445,373 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl327,319,051 - 27,445,574 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1327,254,336 - 27,384,769 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0327,231,171 - 27,362,707 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0327,511,836 - 27,642,805 (+)NCBIUU_Cfam_GSD_1.0
Homer1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213183,538,579 - 183,681,403 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365497,188,850 - 7,320,312 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365497,189,588 - 7,320,117 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HOMER1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl288,122,882 - 88,255,281 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1288,116,664 - 88,253,843 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2289,846,977 - 89,904,301 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.2289,987,133 - 89,996,112 (-)NCBISscrofa10.2Sscrofa10.2susScr3
HOMER1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1473,591,105 - 73,729,680 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl473,589,495 - 73,728,353 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604922,438,015 - 22,576,283 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Homer1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248693,880,001 - 4,012,240 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248693,878,646 - 4,012,211 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000040954   ⟹   ENSPPAP00000018225
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl536,064,665 - 36,205,928 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000040979   ⟹   ENSPPAP00000018250
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl536,066,107 - 36,203,021 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000040983   ⟹   ENSPPAP00000018254
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl536,066,107 - 36,202,839 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000040996   ⟹   ENSPPAP00000018267
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl536,121,817 - 36,203,021 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000040999   ⟹   ENSPPAP00000018270
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl536,121,817 - 36,203,021 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000041002   ⟹   ENSPPAP00000018273
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl536,122,182 - 36,203,021 (+)Ensembl
RefSeq Acc Id: XM_003822281   ⟹   XP_003822329
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2435,785,689 - 35,926,708 (+)NCBI
NHGRI_mPanPan1533,939,170 - 34,080,335 (+)NCBI
Mhudiblu_PPA_v0535,794,627 - 35,936,111 (+)NCBI
PanPan1.1536,065,045 - 36,205,928 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003822329 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000018225
  ENSPPAP00000018225.1
  ENSPPAP00000018250.1
  ENSPPAP00000018254.1
  ENSPPAP00000018267.1
  ENSPPAP00000018270.1
  ENSPPAP00000018273.1
Reference Protein Sequences
RefSeq Acc Id: XP_003822329   ⟸   XM_003822281
- UniProtKB: A0A2R9AR35 (UniProtKB/TrEMBL),   A0A2R9AMA1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000018250   ⟸   ENSPPAT00000040979
RefSeq Acc Id: ENSPPAP00000018254   ⟸   ENSPPAT00000040983
RefSeq Acc Id: ENSPPAP00000018267   ⟸   ENSPPAT00000040996
RefSeq Acc Id: ENSPPAP00000018225   ⟸   ENSPPAT00000040954
RefSeq Acc Id: ENSPPAP00000018270   ⟸   ENSPPAT00000040999
RefSeq Acc Id: ENSPPAP00000018273   ⟸   ENSPPAT00000041002
Protein Domains
WH1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000032101 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000040954.1 UniProtKB/TrEMBL
  ENSPPAT00000040979.1 UniProtKB/TrEMBL
  ENSPPAT00000040983.1 UniProtKB/TrEMBL
  ENSPPAT00000040996.1 UniProtKB/TrEMBL
  ENSPPAT00000040999.1 UniProtKB/TrEMBL
  ENSPPAT00000041002.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.1700 UniProtKB/TrEMBL
  2.30.29.30 UniProtKB/TrEMBL
InterPro Homer UniProtKB/TrEMBL
  Homer_EVH1 UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/TrEMBL
  WH1/EVH1_dom UniProtKB/TrEMBL
KEGG Report pps:100980670 UniProtKB/TrEMBL
NCBI Gene HOMER1 ENTREZGENE
PANTHER HOMER PROTEIN HOMOLOG 1 UniProtKB/TrEMBL
  PTHR10918 UniProtKB/TrEMBL
Pfam WH1 UniProtKB/TrEMBL
PROSITE WH1 UniProtKB/TrEMBL
SMART WH1 UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
  Tropomyosin UniProtKB/TrEMBL
UniProt A0A2R9ALN9_PANPA UniProtKB/TrEMBL
  A0A2R9AMA1 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9AR35 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9AR54_PANPA UniProtKB/TrEMBL
  A0A2R9AR73_PANPA UniProtKB/TrEMBL
  A0A2R9ATN4_PANPA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-03-06 HOMER1  homer scaffold protein 1    homer scaffolding protein 1  Symbol and/or name change 5135510 APPROVED