UMPS (uridine monophosphate synthetase) - Rat Genome Database
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Gene: UMPS (uridine monophosphate synthetase) Pan paniscus
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Symbol: UMPS
Name: uridine monophosphate synthetase
RGD ID: 11677373
Description: ENCODES a protein that exhibits identical protein binding (ortholog); orotate phosphoribosyltransferase activity (ortholog); orotidine-5'-phosphate decarboxylase activity (ortholog); INVOLVED IN cellular response to drug (ortholog); female pregnancy (ortholog); lactation (ortholog); PARTICIPATES IN beta-ureidopropionase deficiency pathway; de novo pyrimidine biosynthetic pathway; dihydropyrimidinase deficiency pathway; ASSOCIATED WITH Acute Erythroblastic Leukemia (ortholog); beta thalassemia (ortholog); Breast Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: LOW QUALITY PROTEIN: uridine 5'-monophosphate synthase; uridine 5'-monophosphate synthase
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.13128,731,309 - 128,745,241 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3128,731,355 - 128,745,029 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v03121,832,758 - 121,851,707 (+)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (ISO)
nucleus  (ISO)

Molecular Function

References

Genomics

Comparative Map Data
UMPS
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.13128,731,309 - 128,745,241 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3128,731,355 - 128,745,029 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v03121,832,758 - 121,851,707 (+)NCBIMhudiblu_PPA_v0panPan3
UMPS
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl3124,730,433 - 124,749,273 (+)EnsemblGRCh38hg38GRCh38
GRCh383124,730,442 - 124,749,273 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh373124,449,299 - 124,468,120 (+)NCBIGRCh37GRCh37hg19GRCh37
GRCh373124,449,213 - 124,468,120 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363125,931,903 - 125,946,318 (+)NCBINCBI36hg18NCBI36
Build 343125,931,902 - 125,946,318NCBI
Celera3122,856,384 - 122,875,279 (+)NCBI
Cytogenetic Map3q21.2NCBI
HuRef3121,823,485 - 121,842,386 (+)NCBIHuRef
CHM1_13124,412,201 - 124,431,088 (+)NCBICHM1_1
Umps
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391633,775,152 - 33,787,408 (-)NCBIGRCm39mm39
GRCm381633,954,782 - 33,967,038 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1633,954,782 - 33,967,038 (-)EnsemblGRCm38mm10GRCm38
MGSCv371633,955,098 - 33,967,089 (-)NCBIGRCm37mm9NCBIm37
MGSCv361633,874,759 - 33,886,750 (-)NCBImm8
Celera1634,439,142 - 34,451,132 (-)NCBICelera
Cytogenetic Map16B3NCBI
Umps
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21166,806,107 - 66,816,520 (+)NCBI
Rnor_6.0 Ensembl1170,034,139 - 70,044,628 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01170,034,181 - 70,044,590 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01173,123,827 - 73,134,236 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41168,619,835 - 68,630,244 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11168,677,423 - 68,687,833 (+)NCBI
Celera1166,256,748 - 66,267,157 (+)NCBICelera
Cytogenetic Map11q22NCBI
Umps
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542723,825,523 - 23,841,152 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542723,825,529 - 23,841,427 (+)NCBIChiLan1.0ChiLan1.0
UMPS
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl3327,754,643 - 27,782,514 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.13327,754,592 - 27,782,517 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Umps
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936725553,278 - 564,846 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UMPS
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13135,610,058 - 135,650,604 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113135,611,857 - 135,650,656 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213145,113,405 - 145,154,901 (-)NCBISscrofa10.2Sscrofa10.2susScr3
UMPS
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12256,081,897 - 56,097,164 (-)NCBI
ChlSab1.1 Ensembl2256,082,103 - 56,097,105 (-)Ensembl
Umps
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624731761,235 - 780,355 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000033812   ⟹   ENSPPAP00000011157
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl3128,731,355 - 128,745,029 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000033814   ⟹   ENSPPAP00000011159
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl3128,731,355 - 128,732,431 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000033816   ⟹   ENSPPAP00000011161
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl3128,731,355 - 128,731,709 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000033825   ⟹   ENSPPAP00000011170
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl3128,736,032 - 128,745,029 (+)Ensembl
RefSeq Acc Id: XM_003825217   ⟹   XP_003825265
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.13128,731,309 - 128,745,241 (+)NCBI
Mhudiblu_PPA_v03121,832,758 - 121,851,707 (+)NCBI
Sequence:
RefSeq Acc Id: XM_034957241   ⟹   XP_034813132
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v03121,833,789 - 121,851,707 (+)NCBI
Protein Sequences
Protein RefSeqs XP_003825265 (Get FASTA)   NCBI Sequence Viewer  
  XP_034813132 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003825265   ⟸   XM_003825217
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_034813132   ⟸   XM_034957241
- Peptide Label: isoform X2
RefSeq Acc Id: ENSPPAP00000011170   ⟸   ENSPPAT00000033825
RefSeq Acc Id: ENSPPAP00000011161   ⟸   ENSPPAT00000033816
RefSeq Acc Id: ENSPPAP00000011157   ⟸   ENSPPAT00000033812
RefSeq Acc Id: ENSPPAP00000011159   ⟸   ENSPPAT00000033814
Protein Domains
OMPdecase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000028773 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000011157 UniProtKB/TrEMBL
  ENSPPAP00000011159 UniProtKB/TrEMBL
  ENSPPAP00000011161 UniProtKB/TrEMBL
  ENSPPAP00000011170 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000033812 UniProtKB/TrEMBL
  ENSPPAT00000033814 UniProtKB/TrEMBL
  ENSPPAT00000033816 UniProtKB/TrEMBL
  ENSPPAT00000033825 UniProtKB/TrEMBL
Gene3D-CATH 3.20.20.70 UniProtKB/TrEMBL
  3.40.50.2020 UniProtKB/TrEMBL
InterPro Aldolase_TIM UniProtKB/TrEMBL
  OMPdecase UniProtKB/TrEMBL
  OMPdecase_AS UniProtKB/TrEMBL
  OMPdeCOase_dom UniProtKB/TrEMBL
  OPRT UniProtKB/TrEMBL
  Or_phspho_trans_dom UniProtKB/TrEMBL
  PRibTrfase_dom UniProtKB/TrEMBL
  PRTase-like UniProtKB/TrEMBL
  RibuloseP-bd_barrel UniProtKB/TrEMBL
NCBI Gene UMPS ENTREZGENE
PANTHER PTHR32119:SF2 UniProtKB/TrEMBL
Pfam OMPdecase UniProtKB/TrEMBL
  Pribosyltran UniProtKB/TrEMBL
PROSITE OMPDECASE UniProtKB/TrEMBL
SMART OMPdecase UniProtKB/TrEMBL
Superfamily-SCOP SSF51366 UniProtKB/TrEMBL
  SSF53271 UniProtKB/TrEMBL
TIGRFAMs pyrE UniProtKB/TrEMBL
  pyrF UniProtKB/TrEMBL
UniProt A0A2R9A1L8_PANPA UniProtKB/TrEMBL
  A0A2R9A2S8_PANPA UniProtKB/TrEMBL
  A0A2R9A652_PANPA UniProtKB/TrEMBL
  A0A2R9A713_PANPA UniProtKB/TrEMBL