TRIM59 (tripartite motif containing 59) - Rat Genome Database

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Gene: TRIM59 (tripartite motif containing 59) Pan paniscus
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Symbol: TRIM59
Name: tripartite motif containing 59
RGD ID: 11676488
Description: ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); INVOLVED IN innate immune response (ortholog); negative regulation of I-kappaB kinase/NF-kappaB signaling (ortholog); negative regulation of viral entry into host cell (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN endoplasmic reticulum (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: LOW QUALITY PROTEIN: tripartite motif-containing protein 59
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.13165,507,354 - 165,520,041 (-)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v03157,458,982 - 157,471,521 (-)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
TRIM59
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.13165,507,354 - 165,520,041 (-)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v03157,458,982 - 157,471,521 (-)NCBIMhudiblu_PPA_v0panPan3
TRIM59
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl3160,432,445 - 160,485,773 (-)EnsemblGRCh38hg38GRCh38
GRCh383160,435,503 - 160,449,786 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh373160,153,291 - 160,167,574 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363161,635,985 - 161,650,320 (-)NCBINCBI36hg18NCBI36
Build 343161,637,914 - 161,650,328NCBI
Celera3158,574,658 - 158,589,643 (-)NCBI
Cytogenetic Map3q25.33NCBI
HuRef3157,551,862 - 157,566,197 (-)NCBIHuRef
CHM1_13160,116,177 - 160,130,525 (-)NCBICHM1_1
Trim59
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39368,942,625 - 68,952,075 (-)NCBIGRCm39mm39
GRCm39 Ensembl368,942,621 - 68,952,088 (-)Ensembl
GRCm38369,035,292 - 69,044,742 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl369,035,288 - 69,044,755 (-)EnsemblGRCm38mm10GRCm38
MGSCv37368,839,216 - 68,848,664 (-)NCBIGRCm37mm9NCBIm37
MGSCv36369,123,221 - 69,132,589 (-)NCBImm8
MGSCv36369,638,003 - 69,647,372 (-)NCBImm8
Celera364,409,794 - 64,412,480 (+)NCBICelera
Cytogenetic Map3E1NCBI
Trim59
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22153,269,210 - 153,281,185 (-)NCBI
Rnor_6.0 Ensembl2165,629,918 - 165,641,573 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.02165,629,903 - 165,641,751 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02184,991,013 - 185,003,008 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42159,016,206 - 159,027,069 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12158,967,598 - 158,977,960 (-)NCBI
Celera2147,619,995 - 147,630,795 (-)NCBICelera
Cytogenetic Map2q32NCBI
Trim59
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544810,962,549 - 10,963,736 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544810,962,181 - 10,971,948 (-)NCBIChiLan1.0ChiLan1.0
TRIM59
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13426,495,628 - 26,509,445 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3426,497,607 - 26,498,821 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3430,537,775 - 30,551,618 (-)NCBI
ROS_Cfam_1.03426,552,296 - 26,566,141 (-)NCBI
UMICH_Zoey_3.13426,481,972 - 26,495,814 (-)NCBI
UNSW_CanFamBas_1.03426,442,632 - 26,456,475 (-)NCBI
UU_Cfam_GSD_1.03426,682,721 - 26,696,563 (-)NCBI
Trim59
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560292,359,263 - 92,373,160 (-)NCBI
SpeTri2.0NW_004936708396,688 - 410,720 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRIM59
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13100,118,825 - 100,132,968 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113100,118,824 - 100,133,117 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213108,423,792 - 108,438,078 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TRIM59
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11530,390,734 - 30,401,992 (+)NCBI
ChlSab1.1 Ensembl1530,400,222 - 30,401,430 (+)Ensembl
Vero_WHO_p1.0NW_0236660412,908,740 - 2,922,242 (+)NCBI
Trim59
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473038,178,975 - 38,192,922 (-)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_034957675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide SSBP01000287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_034957675   ⟹   XP_034813566
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v03157,458,982 - 157,471,521 (-)NCBI
Protein Sequences
Protein RefSeqs XP_034813566 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_034813566   ⟸   XM_034957675


Additional Information

Database Acc Id Source(s)
NCBI Gene TRIM59 ENTREZGENE