TMEM235 (transmembrane protein 235) - Rat Genome Database

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Gene: TMEM235 (transmembrane protein 235) Pan paniscus
Analyze
Symbol: TMEM235
Name: transmembrane protein 235
RGD ID: 11675688
Description: ASSOCIATED WITH genetic disease (ortholog); FOUND IN apical plasma membrane (ortholog); cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC117976630; uncharacterized LOC117976630; uncharacterized protein LOC117976630
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21994,281,720 - 94,305,659 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11799,111,226 - 99,135,104 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01772,308,950 - 72,319,358 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11777,855,519 - 77,869,262 (+)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
TMEM235
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21994,281,720 - 94,305,659 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11799,111,226 - 99,135,104 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01772,308,950 - 72,319,358 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11777,855,519 - 77,869,262 (+)NCBIpanpan1.1PanPan1.1panPan2
TMEM235
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381778,231,293 - 78,240,987 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1778,231,310 - 78,240,987 (+)EnsemblGRCh38hg38GRCh38
GRCh371776,227,374 - 76,237,068 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361773,739,700 - 73,749,114 (+)NCBINCBI36Build 36hg18NCBI36
Celera1772,823,419 - 72,833,096 (+)NCBICelera
Cytogenetic Map17q25.3NCBI
HuRef1771,651,521 - 71,661,193 (+)NCBIHuRef
CHM1_11776,291,917 - 76,301,608 (+)NCBICHM1_1
T2T-CHM13v2.01779,125,384 - 79,135,078 (+)NCBIT2T-CHM13v2.0
Tmem235
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911117,751,578 - 117,756,369 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11117,751,578 - 117,756,369 (+)EnsemblGRCm39 Ensembl
GRCm3811117,860,752 - 117,865,543 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11117,860,752 - 117,865,543 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711117,722,066 - 117,726,857 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611117,676,842 - 117,680,449 (+)NCBIMGSCv36mm8
Celera11129,605,774 - 129,610,778 (+)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1182.96NCBI
Tmem235
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810103,585,179 - 103,590,869 (+)NCBIGRCr8
mRatBN7.210103,081,716 - 103,092,187 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10103,086,497 - 103,092,184 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.010106,864,831 - 106,875,091 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10106,869,401 - 106,874,029 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010106,503,501 - 106,513,769 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera10101,641,753 - 101,652,146 (+)NCBICelera
Cytogenetic Map10q32.2NCBI
Tmem235
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555064,327,909 - 4,338,513 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555064,329,436 - 4,333,484 (-)NCBIChiLan1.0ChiLan1.0
TMEM235
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.192,918,854 - 2,923,390 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl92,919,594 - 2,923,360 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha93,602,740 - 3,607,236 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.093,597,123 - 3,601,619 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl93,596,540 - 3,601,619 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.193,620,207 - 3,624,702 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.093,744,407 - 3,748,903 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.093,825,769 - 3,830,265 (-)NCBIUU_Cfam_GSD_1.0
Tmem235
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056023,577,353 - 3,585,292 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365942,828,544 - 2,833,176 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365942,828,544 - 2,833,176 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM235
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1123,737,283 - 3,742,745 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
TMEM235
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11670,244,579 - 70,251,937 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1670,244,594 - 70,251,690 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607741,354,435 - 41,362,744 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmem235
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248017,737,669 - 7,747,222 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_057300227   ⟹   XP_057156210
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21994,281,746 - 94,292,099 (+)NCBI
NHGRI_mPanPan11799,111,226 - 99,121,541 (+)NCBI
RefSeq Acc Id: XM_063598796   ⟹   XP_063454866
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21994,281,766 - 94,292,099 (+)NCBI
RefSeq Acc Id: XM_063598797   ⟹   XP_063454867
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21994,281,720 - 94,305,659 (+)NCBI
Protein Sequences
Protein RefSeqs XP_057156210 (Get FASTA)   NCBI Sequence Viewer  
  XP_063454866 (Get FASTA)   NCBI Sequence Viewer  
  XP_063454867 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_057156210   ⟸   XM_057300227
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063454867   ⟸   XM_063598797
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063454866   ⟸   XM_063598796
- Peptide Label: isoform X1


Additional Information

Database Acc Id Source(s)
NCBI Gene TMEM235 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-04-20 TMEM235  transmembrane protein 235  LOC117976630  uncharacterized LOC117976630  Data merged from RGD:32727621 737654 PROVISIONAL