ARL13B (ADP ribosylation factor like GTPase 13B) - Rat Genome Database

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Gene: ARL13B (ADP ribosylation factor like GTPase 13B) Pan paniscus
Analyze
Symbol: ARL13B
Name: ADP ribosylation factor like GTPase 13B
RGD ID: 11674939
Description: ENCODES a protein that exhibits GTP binding (inferred); GTPase activity (inferred); INVOLVED IN cilium assembly (ortholog); determination of left/right symmetry (ortholog); dorsal/ventral pattern formation (ortholog); ASSOCIATED WITH autosomal recessive thrombophilia due to protein S deficiency (ortholog); cystic kidney disease (ortholog); genetic disease (ortholog); FOUND IN axoneme (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ADP-ribosylation factor-like protein 13B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2291,890,580 - 91,972,922 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1391,895,366 - 91,974,311 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0391,044,332 - 91,121,686 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1397,725,136 - 97,799,932 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl397,725,136 - 97,799,932 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ARL13B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2291,890,580 - 91,972,922 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1391,895,366 - 91,974,311 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0391,044,332 - 91,121,686 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1397,725,136 - 97,799,932 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl397,725,136 - 97,799,932 (+)Ensemblpanpan1.1panPan2
ARL13B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38393,980,155 - 94,055,678 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl393,980,139 - 94,055,678 (+)EnsemblGRCh38hg38GRCh38
GRCh37393,698,999 - 93,774,522 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36395,181,672 - 95,256,813 (+)NCBINCBI36Build 36hg18NCBI36
Build 34395,181,671 - 95,256,811NCBI
Celera392,082,477 - 92,158,408 (+)NCBICelera
Cytogenetic Map3q11.1-q11.2NCBI
HuRef391,061,683 - 91,137,139 (+)NCBIHuRef
CHM1_1393,662,067 - 93,737,527 (+)NCBICHM1_1
T2T-CHM13v2.0396,678,283 - 96,754,130 (+)NCBIT2T-CHM13v2.0
Arl13b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391662,613,671 - 62,667,418 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1662,614,048 - 62,667,403 (-)EnsemblGRCm39 Ensembl
GRCm381662,793,308 - 62,847,055 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1662,793,685 - 62,847,040 (-)EnsemblGRCm38mm10GRCm38
MGSCv371662,793,515 - 62,846,866 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361662,735,945 - 62,789,253 (-)NCBIMGSCv36mm8
Celera1663,102,388 - 63,155,607 (-)NCBICelera
Cytogenetic Map16C1.3NCBI
cM Map1636.43NCBI
Arl13b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81113,597,538 - 13,663,681 (-)NCBIGRCr8
mRatBN7.211150,100 - 217,103 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl11150,955 - 217,197 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx118,747,109 - 8,813,116 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0111,540,368 - 1,606,375 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.011645,150 - 711,155 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.071,122,567 - 1,188,209 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl71,122,567 - 1,188,209 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.071,111,829 - 1,181,765 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera13160,428 - 223,413 (-)NCBICelera
Cytogenetic Map11p12NCBI
Arl13b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554073,402,908 - 3,460,105 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554073,402,214 - 3,477,839 (-)NCBIChiLan1.0ChiLan1.0
ARL13B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1331,698,360 - 1,762,846 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl331,698,363 - 1,761,641 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha331,878,107 - 1,942,635 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0331,798,026 - 1,862,534 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl331,798,051 - 1,862,531 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1331,707,188 - 1,771,378 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0331,742,070 - 1,806,566 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0331,967,145 - 2,031,460 (+)NCBIUU_Cfam_GSD_1.0
Arl13b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602155,334,820 - 155,399,714 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936666116,264 - 177,989 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936666115,964 - 179,639 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARL13B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13165,828,059 - 165,910,961 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113165,829,772 - 165,910,959 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ARL13B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12286,648,924 - 86,722,006 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2286,651,076 - 86,721,948 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604179,960,967 - 80,033,874 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Arl13b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247896,710,681 - 6,783,667 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247896,710,858 - 6,783,097 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000025959   ⟹   ENSPPAP00000005789
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl397,725,136 - 97,799,932 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000025965   ⟹   ENSPPAP00000005793
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl397,725,421 - 97,797,911 (+)Ensembl
RefSeq Acc Id: XM_034956971   ⟹   XP_034812862
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2291,890,590 - 91,972,922 (+)NCBI
NHGRI_mPanPan1391,895,366 - 91,974,311 (+)NCBI
Mhudiblu_PPA_v0391,044,333 - 91,121,686 (+)NCBI
RefSeq Acc Id: XM_034956972   ⟹   XP_034812863
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2291,907,327 - 91,963,815 (+)NCBI
NHGRI_mPanPan1391,912,115 - 91,971,914 (+)NCBI
Mhudiblu_PPA_v0391,044,332 - 91,120,627 (+)NCBI
RefSeq Acc Id: XM_034956973   ⟹   XP_034812864
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2291,890,598 - 91,967,133 (+)NCBI
NHGRI_mPanPan1391,895,378 - 91,972,321 (+)NCBI
Mhudiblu_PPA_v0391,044,346 - 91,120,627 (+)NCBI
RefSeq Acc Id: XM_055110172   ⟹   XP_054966147
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2291,907,334 - 91,967,133 (+)NCBI
NHGRI_mPanPan1391,896,706 - 91,971,914 (+)NCBI
RefSeq Acc Id: XM_063602866   ⟹   XP_063458936
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2291,890,580 - 91,963,815 (+)NCBI
RefSeq Acc Id: XM_063602867   ⟹   XP_063458937
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2291,907,327 - 91,963,815 (+)NCBI
RefSeq Acc Id: XM_063602868   ⟹   XP_063458938
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2291,890,591 - 91,967,133 (+)NCBI
RefSeq Acc Id: XM_063602869   ⟹   XP_063458939
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2291,891,826 - 91,963,815 (+)NCBI
RefSeq Acc Id: XM_063602870   ⟹   XP_063458940
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2291,890,588 - 91,963,815 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_034812863   ⟸   XM_034956972
- Peptide Label: isoform X2
RefSeq Acc Id: XP_034812862   ⟸   XM_034956971
- Peptide Label: isoform X3
- UniProtKB: A0A2R8ZLF1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034812864   ⟸   XM_034956973
- Peptide Label: isoform X7
- UniProtKB: A0A2R8ZLF5 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000005793   ⟸   ENSPPAT00000025965
RefSeq Acc Id: ENSPPAP00000005789   ⟸   ENSPPAT00000025959
RefSeq Acc Id: XP_054966147   ⟸   XM_055110172
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063458936   ⟸   XM_063602866
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063458940   ⟸   XM_063602870
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063458938   ⟸   XM_063602868
- Peptide Label: isoform X3
- UniProtKB: A0A2R8ZLF1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063458939   ⟸   XM_063602869
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063458937   ⟸   XM_063602867
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000023593 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000025959.1 UniProtKB/TrEMBL
  ENSPPAT00000025965.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/TrEMBL
  Small_GTP-bd_dom UniProtKB/TrEMBL
  Small_GTPase_ARF/SAR UniProtKB/TrEMBL
KEGG Report pps:100967371 UniProtKB/TrEMBL
NCBI Gene ARL13B ENTREZGENE
PANTHER ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 13B UniProtKB/TrEMBL
  ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 13B UniProtKB/TrEMBL
Pfam Arf UniProtKB/TrEMBL
PRINTS SAR1GTPBP UniProtKB/TrEMBL
PROSITE ARF UniProtKB/TrEMBL
SMART ARF UniProtKB/TrEMBL
  SAR UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A2R8ZLF1 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R8ZLF5 ENTREZGENE, UniProtKB/TrEMBL