MCOLN1 (mucolipin TRP cation channel 1) - Rat Genome Database

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Gene: MCOLN1 (mucolipin TRP cation channel 1) Pan paniscus
Analyze
Symbol: MCOLN1
Name: mucolipin TRP cation channel 1
RGD ID: 11673368
Description: ENCODES a protein that exhibits calcium channel activity (ortholog); iron ion transmembrane transporter activity (ortholog); NAADP-sensitive calcium-release channel activity (ortholog); INVOLVED IN autophagosome maturation (ortholog); iron ion transmembrane transport (ortholog); release of sequestered calcium ion into cytosol (ortholog); PARTICIPATES IN calcium transport pathway; calcium/calcium-mediated signaling pathway; ASSOCIATED WITH Boucher-Neuhauser syndrome (ortholog); Corneal Opacity (ortholog); familial hemophagocytic lymphohistiocytosis 5 (ortholog); FOUND IN intracellular vesicle (ortholog); lysosomal membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: mucolipin 1; mucolipin-1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22012,193,834 - 12,205,855 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11911,312,270 - 11,323,883 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0196,813,498 - 6,825,153 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1197,671,704 - 7,683,093 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl197,671,704 - 7,683,093 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
MCOLN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22012,193,834 - 12,205,855 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11911,312,270 - 11,323,883 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0196,813,498 - 6,825,153 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1197,671,704 - 7,683,093 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl197,671,704 - 7,683,093 (+)Ensemblpanpan1.1panPan2
MCOLN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38197,522,624 - 7,534,009 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl197,522,624 - 7,534,009 (+)EnsemblGRCh38hg38GRCh38
GRCh37197,587,510 - 7,598,895 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36197,493,512 - 7,504,864 (+)NCBINCBI36Build 36hg18NCBI36
Build 34197,493,511 - 7,504,864NCBI
Celera197,460,019 - 7,471,418 (+)NCBICelera
Cytogenetic Map19p13.2NCBI
HuRef197,258,672 - 7,270,051 (+)NCBIHuRef
CHM1_1197,587,414 - 7,598,813 (+)NCBICHM1_1
T2T-CHM13v2.0197,523,360 - 7,534,743 (+)NCBIT2T-CHM13v2.0
Mcoln1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3983,550,458 - 3,565,232 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl83,550,457 - 3,565,232 (+)EnsemblGRCm39 Ensembl
GRCm3883,500,519 - 3,515,232 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl83,500,457 - 3,515,232 (+)EnsemblGRCm38mm10GRCm38
MGSCv3783,500,519 - 3,515,232 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3683,500,519 - 3,515,232 (+)NCBIMGSCv36mm8
Celera83,726,493 - 3,741,206 (+)NCBICelera
Cytogenetic Map8A1.1NCBI
cM Map81.92NCBI
Mcoln1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8126,357,851 - 6,372,151 (+)NCBIGRCr8
mRatBN7.2121,560,341 - 1,574,252 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl121,560,359 - 1,574,252 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx122,224,512 - 2,238,389 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0122,848,082 - 2,861,959 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0121,620,097 - 1,633,967 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0122,054,629 - 2,068,682 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl122,054,680 - 2,068,682 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0124,216,866 - 4,230,870 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4122,640,030 - 2,653,923 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1122,640,054 - 2,653,874 (-)NCBI
Celera123,416,808 - 3,430,691 (+)NCBICelera
Cytogenetic Map12p12NCBI
Mcoln1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555631,703,416 - 1,745,996 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555631,703,408 - 1,712,908 (-)NCBIChiLan1.0ChiLan1.0
MCOLN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12052,318,411 - 52,327,389 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2052,318,408 - 52,348,963 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2052,122,621 - 52,131,450 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02052,847,692 - 52,856,522 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2052,847,619 - 52,856,453 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12052,051,554 - 52,060,343 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02052,495,158 - 52,503,986 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02052,726,054 - 52,734,883 (+)NCBIUU_Cfam_GSD_1.0
Mcoln1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118213,225,990 - 213,234,438 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365884,600,344 - 4,608,787 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365884,600,344 - 4,608,793 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MCOLN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl271,602,770 - 71,613,312 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1271,602,888 - 71,613,331 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2272,056,664 - 72,151,756 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MCOLN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.167,019,132 - 7,030,675 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl67,019,277 - 7,030,474 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666081837,403 - 849,809 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mcoln1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624828634,214 - 643,633 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624828634,318 - 643,406 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003810017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSPPAT00000047666   ⟹   ENSPPAP00000024840
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl197,671,704 - 7,683,093 (+)Ensembl
RefSeq Acc Id: XM_003810017   ⟹   XP_003810065
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22012,193,834 - 12,205,855 (+)NCBI
NHGRI_mPanPan11911,312,270 - 11,323,883 (+)NCBI
Mhudiblu_PPA_v0196,813,498 - 6,825,153 (+)NCBI
PanPan1.1197,671,704 - 7,683,093 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003810065 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000024840
  ENSPPAP00000024840.1
RefSeq Acc Id: XP_003810065   ⟸   XM_003810017
- UniProtKB: A0A2R9B983 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000024840   ⟸   ENSPPAT00000047666

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000035546 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000047666.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.70 UniProtKB/TrEMBL
InterPro MCLN_ECD UniProtKB/TrEMBL
  ML1_ELD UniProtKB/TrEMBL
  Mucolipin UniProtKB/TrEMBL
  PKD1_2_channel UniProtKB/TrEMBL
KEGG Report pps:100985054 UniProtKB/TrEMBL
NCBI Gene MCOLN1 ENTREZGENE
PANTHER MUCOLIPIN-1 UniProtKB/TrEMBL
  PTHR12127 UniProtKB/TrEMBL
Pfam MCLN_ECD UniProtKB/TrEMBL
  PKD_channel UniProtKB/TrEMBL
UniProt A0A2R9B983 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-11-03 MCOLN1  mucolipin TRP cation channel 1  MCOLN1  mucolipin 1  Symbol and/or name change 5135510 APPROVED