RPL31 (ribosomal protein L31) - Rat Genome Database

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Gene: RPL31 (ribosomal protein L31) Pan paniscus
Analyze
Symbol: RPL31
Name: ribosomal protein L31
RGD ID: 11673061
Description: ENCODES a protein that exhibits structural constituent of ribosome (inferred); INVOLVED IN cytoplasmic translation (inferred); translation (inferred); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; ASSOCIATED WITH Breast Neoplasms (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic side of rough endoplasmic reticulum membrane (ortholog); cytosolic large ribosomal subunit (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 60S ribosomal protein L31; large ribosomal subunit protein eL31
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21227,206,182 - 27,225,988 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A27,208,963 - 27,226,498 (-)NCBINHGRI_mPanPan1
PanPan1.12A101,978,288 - 101,996,064 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A101,978,759 - 101,996,058 (+)Ensemblpanpan1.1panPan2


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
RPL31
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21227,206,182 - 27,225,988 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A27,208,963 - 27,226,498 (-)NCBINHGRI_mPanPan1
PanPan1.12A101,978,288 - 101,996,064 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A101,978,759 - 101,996,058 (+)Ensemblpanpan1.1panPan2
RPL31
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382101,002,289 - 101,019,724 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2101,002,229 - 101,024,032 (+)EnsemblGRCh38hg38GRCh38
GRCh372101,618,751 - 101,636,186 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362100,985,123 - 101,002,587 (+)NCBINCBI36Build 36hg18NCBI36
Build 342101,077,268 - 101,081,398NCBI
Celera295,822,605 - 95,840,060 (+)NCBICelera
Cytogenetic Map2q11.2NCBI
HuRef295,382,734 - 95,400,192 (+)NCBIHuRef
CHM1_12101,623,013 - 101,640,477 (+)NCBICHM1_1
T2T-CHM13v2.02101,460,986 - 101,478,421 (+)NCBIT2T-CHM13v2.0
Rpl31
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39139,406,987 - 39,410,992 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl139,406,923 - 39,410,992 (+)EnsemblGRCm39 Ensembl
GRCm38139,367,851 - 39,371,911 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl139,367,842 - 39,371,911 (+)EnsemblGRCm38mm10GRCm38
MGSCv37139,424,696 - 39,428,756 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36139,312,465 - 39,316,453 (+)NCBIMGSCv36mm8
Celera1592,888,049 - 92,888,542 (-)NCBICelera
Cytogenetic Map1BNCBI
cM Map118.3NCBI
Rpl31
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8949,143,044 - 49,147,155 (+)NCBIGRCr8
mRatBN7.2941,647,397 - 41,651,441 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl941,647,426 - 41,662,129 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx950,143,377 - 50,147,422 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0955,266,125 - 55,270,170 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0953,548,123 - 53,552,167 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0946,086,959 - 46,090,444 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl946,086,984 - 46,090,997 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0945,774,871 - 45,778,356 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4938,439,431 - 38,442,916 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1938,440,871 - 38,444,883 (+)NCBI
Celera939,396,969 - 39,400,454 (+)NCBICelera
Cytogenetic Map9q22NCBI
Rpl31
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554706,912,537 - 6,916,232 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554706,912,109 - 6,916,232 (+)NCBIChiLan1.0ChiLan1.0
RPL31
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13229,400,195 - 29,400,624 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3229,400,216 - 29,400,593 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1041,758,134 - 41,767,485 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01042,700,902 - 42,710,022 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1042,693,031 - 42,709,603 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11042,412,727 - 42,421,780 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01042,695,934 - 42,705,287 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01042,887,691 - 42,896,808 (-)NCBIUU_Cfam_GSD_1.0
Rpl31
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629286,478,127 - 86,482,666 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493666186,547 - 91,380 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493666186,834 - 91,309 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPL31
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl353,281,339 - 53,295,304 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1353,289,993 - 53,295,387 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2355,836,226 - 55,841,636 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RPL31
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1144,710,622 - 4,714,974 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666041172,330,229 - 172,335,147 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rpl31
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247495,795,872 - 5,800,410 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247495,795,374 - 5,800,410 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000029971   ⟹   ENSPPAP00000007533
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2A101,978,759 - 101,996,058 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000029973   ⟹   ENSPPAP00000007535
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2A101,978,759 - 101,994,212 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000029975   ⟹   ENSPPAP00000007537
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2A101,978,759 - 101,982,504 (+)Ensembl
RefSeq Acc Id: XM_003815772   ⟹   XP_003815820
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21227,219,483 - 27,225,988 (-)NCBI
NHGRI_mPanPan12A27,222,244 - 27,226,493 (-)NCBI
PanPan1.12A101,978,288 - 101,982,504 (+)NCBI
Sequence:
RefSeq Acc Id: XM_003815773   ⟹   XP_003815821
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21227,206,182 - 27,225,988 (-)NCBI
NHGRI_mPanPan12A27,208,963 - 27,226,498 (-)NCBI
PanPan1.12A101,978,288 - 101,996,064 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_003815821   ⟸   XM_003815773
- Peptide Label: isoform X1
- UniProtKB: A0A2R8ZSL0 (UniProtKB/TrEMBL),   A0A2R8ZX81 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003815820   ⟸   XM_003815772
- Peptide Label: isoform X2
- UniProtKB: A0A2R8ZRE4 (UniProtKB/TrEMBL),   A0A2R8Z954 (UniProtKB/TrEMBL),   A0A2R9A0X6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000007535   ⟸   ENSPPAT00000029973
RefSeq Acc Id: ENSPPAP00000007537   ⟸   ENSPPAT00000029975
RefSeq Acc Id: ENSPPAP00000007533   ⟸   ENSPPAT00000029971


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000006764 UniProtKB/TrEMBL
  ENSPPAG00000026810 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSPPAG00000028653 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000007346.1 UniProtKB/TrEMBL
  ENSPPAT00000029971.1 UniProtKB/TrEMBL
  ENSPPAT00000029973.1 UniProtKB/TrEMBL
  ENSPPAT00000029975.1 UniProtKB/TrEMBL
  ENSPPAT00000033537.1 UniProtKB/TrEMBL
Gene3D-CATH 3.10.440.10 UniProtKB/TrEMBL
InterPro Ribosomal_L31e UniProtKB/TrEMBL
  Ribosomal_L31e_CS UniProtKB/TrEMBL
  Ribosomal_L31e_dom_sf UniProtKB/TrEMBL
KEGG Report pps:100972017 UniProtKB/TrEMBL
NCBI Gene RPL31 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L31 UniProtKB/TrEMBL
  60S RIBOSOMAL PROTEIN L31 UniProtKB/TrEMBL
  60S RIBOSOMAL PROTEIN L31 UniProtKB/TrEMBL
  60S RIBOSOMAL PROTEIN L31 UniProtKB/TrEMBL
  PTHR10956 UniProtKB/TrEMBL
Pfam Ribosomal_L31e UniProtKB/TrEMBL
PROSITE RIBOSOMAL_L31E UniProtKB/TrEMBL
SMART Ribosomal_L31e UniProtKB/TrEMBL
Superfamily-SCOP SSF54575 UniProtKB/TrEMBL
UniProt A0A2R8Z954 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R8ZRE4 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R8ZSL0 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R8ZX81 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9A0X6 ENTREZGENE, UniProtKB/TrEMBL