NCAM2 (neural cell adhesion molecule 2) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: NCAM2 (neural cell adhesion molecule 2) Pan paniscus
Analyze
Symbol: NCAM2
Name: neural cell adhesion molecule 2
RGD ID: 11669954
Description: ENCODES a protein that exhibits identical protein binding (inferred); INVOLVED IN axonal fasciculation (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); amenorrhea (ortholog); genetic disease (ortholog); FOUND IN axon (ortholog); synaptic membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22217,454,640 - 17,999,508 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12112,291,281 - 12,838,832 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0217,703,278 - 8,250,763 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12121,061,757 - 21,602,254 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2121,344,602 - 21,601,438 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
NCAM2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22217,454,640 - 17,999,508 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12112,291,281 - 12,838,832 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0217,703,278 - 8,250,763 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12121,061,757 - 21,602,254 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2121,344,602 - 21,601,438 (+)Ensemblpanpan1.1panPan2
NCAM2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382120,998,409 - 21,543,329 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2120,998,409 - 21,543,329 (+)EnsemblGRCh38hg38GRCh38
GRCh372122,370,727 - 22,915,650 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362121,292,504 - 21,833,085 (+)NCBINCBI36Build 36hg18NCBI36
Build 342121,292,503 - 21,833,085NCBI
Celera217,541,720 - 8,085,871 (+)NCBICelera
Cytogenetic Map21q21.1NCBI
HuRef217,759,027 - 8,304,119 (+)NCBIHuRef
CHM1_12121,932,803 - 22,475,089 (+)NCBICHM1_1
T2T-CHM13v2.02119,360,795 - 19,909,385 (+)NCBIT2T-CHM13v2.0
Ncam2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391680,997,501 - 81,425,549 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1680,997,585 - 81,423,716 (+)EnsemblGRCm39 Ensembl
GRCm381681,200,697 - 81,624,290 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1681,200,697 - 81,626,828 (+)EnsemblGRCm38mm10GRCm38
MGSCv371681,200,942 - 81,624,535 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361681,083,363 - 81,480,397 (+)NCBIMGSCv36mm8
Celera1681,402,043 - 81,825,338 (+)NCBICelera
Cytogenetic Map16C3.3NCBI
cM Map1645.89NCBI
Ncam2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81133,591,748 - 34,078,788 (+)NCBIGRCr8
mRatBN7.21120,104,974 - 20,592,168 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1120,104,925 - 20,591,984 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1128,761,953 - 29,257,661 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01121,463,433 - 21,958,042 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01120,651,012 - 21,146,747 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01119,669,922 - 20,705,063 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1120,471,764 - 20,705,063 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01123,856,942 - 24,353,041 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41120,409,948 - 20,911,422 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11120,423,191 - 20,911,422 (+)NCBI
Celera1119,468,505 - 20,502,763 (+)NCBICelera
Cytogenetic Map11q11NCBI
Ncam2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540721,730,434 - 22,215,377 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540721,730,331 - 22,220,664 (+)NCBIChiLan1.0ChiLan1.0
NCAM2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13116,912,768 - 17,434,854 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3116,912,908 - 17,429,510 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3116,950,212 - 17,475,661 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03116,954,178 - 17,471,017 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3116,954,372 - 17,470,285 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13116,959,755 - 17,482,428 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03116,972,239 - 17,488,890 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03117,374,303 - 17,889,819 (+)NCBIUU_Cfam_GSD_1.0
Ncam2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440497118,126,187 - 18,346,662 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049368221,036,205 - 1,189,028 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049368221,033,660 - 1,189,131 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NCAM2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13185,176,461 - 185,679,885 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113185,176,282 - 185,679,891 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213195,314,227 - 195,518,758 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NCAM2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1271,075,834 - 71,622,707 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl271,076,654 - 71,442,031 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605082,397,301 - 82,957,086 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ncam2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247459,327,345 - 9,822,852 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247459,327,125 - 9,826,922 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000040354   ⟹   ENSPPAP00000017645
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2121,344,602 - 21,601,438 (+)Ensembl
RefSeq Acc Id: XM_008972557   ⟹   XP_008970805
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22217,455,115 - 17,947,331 (+)NCBI
NHGRI_mPanPan12112,291,301 - 12,785,710 (+)NCBI
Mhudiblu_PPA_v0217,703,375 - 8,192,811 (+)NCBI
PanPan1.12121,061,757 - 21,550,904 (+)NCBI
Sequence:
RefSeq Acc Id: XM_034947985   ⟹   XP_034803876
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22217,455,117 - 17,999,508 (+)NCBI
NHGRI_mPanPan12112,291,298 - 12,838,832 (+)NCBI
Mhudiblu_PPA_v0217,703,375 - 8,250,763 (+)NCBI
RefSeq Acc Id: XM_034947987   ⟹   XP_034803878
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22217,455,118 - 17,999,508 (+)NCBI
NHGRI_mPanPan12112,291,281 - 12,838,832 (+)NCBI
Mhudiblu_PPA_v0217,703,278 - 8,250,763 (+)NCBI
RefSeq Acc Id: XM_057300937   ⟹   XP_057156920
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22217,454,640 - 17,858,397 (+)NCBI
NHGRI_mPanPan12112,291,485 - 12,694,048 (+)NCBI
Protein Sequences
Protein RefSeqs XP_008970805 (Get FASTA)   NCBI Sequence Viewer  
  XP_034803876 (Get FASTA)   NCBI Sequence Viewer  
  XP_034803878 (Get FASTA)   NCBI Sequence Viewer  
  XP_057156920 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000017645.1
Reference Protein Sequences
RefSeq Acc Id: XP_008970805   ⟸   XM_008972557
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_034803878   ⟸   XM_034947987
- Peptide Label: isoform X2
- UniProtKB: A0A2R9API8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034803876   ⟸   XM_034947985
- Peptide Label: isoform X1
- UniProtKB: A0A2R9API8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000017645   ⟸   ENSPPAT00000040354
RefSeq Acc Id: XP_057156920   ⟸   XM_057300937
- Peptide Label: isoform X4
Protein Domains
Fibronectin type-III   Ig-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000031885 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000040354.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro FN3_dom UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_I-set UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/TrEMBL
  Ig_V-set UniProtKB/TrEMBL
  Neural_cell_adh UniProtKB/TrEMBL
NCBI Gene NCAM2 ENTREZGENE
PANTHER CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN UniProtKB/TrEMBL
  MICROFIBRILLAR-ASSOCIATED PROTEIN 3-LIKE-RELATED UniProtKB/TrEMBL
Pfam fn3 UniProtKB/TrEMBL
  I-set UniProtKB/TrEMBL
  Ig_3 UniProtKB/TrEMBL
PRINTS NCAMFAMILY UniProtKB/TrEMBL
PROSITE FN3 UniProtKB/TrEMBL
  IG_LIKE UniProtKB/TrEMBL
SMART FN3 UniProtKB/TrEMBL
  IGc2 UniProtKB/TrEMBL
  IGv UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
  SSF49265 UniProtKB/TrEMBL
UniProt A0A2R9API8 ENTREZGENE, UniProtKB/TrEMBL