SCFD1 (sec1 family domain containing 1)

Gene: SCFD1 (sec1 family domain containing 1) Pan paniscus

Analyze

Symbol:

SCFD1

Name:

sec1 family domain containing 1

RGD ID:

11669249

Description:

ENCODES a protein that exhibits protein-containing complex binding (ortholog); syntaxin binding (ortholog); INVOLVED IN post-Golgi vesicle-mediated transport (ortholog); regulation of ER to Golgi vesicle-mediated transport (ortholog); response to hypoxia (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis (ortholog); Brain-Lung-Thyroid Syndrome (ortholog); genetic disease (ortholog); FOUND IN Golgi-associated vesicle (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

sec1 family domain-containing protein 1

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	31,953,881 - 32,060,885 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	31,170,383 - 31,277,398 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	11,401,378 - 11,508,418 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	29,602,185 - 29,709,133 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	29,602,241 - 29,709,133 (+)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

amyotrophic lateral sclerosis (ISO)

Brain-Lung-Thyroid Syndrome (ISO)

genetic disease (ISO)

Reperfusion Injury (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

endoplasmic reticulum to Golgi vesicle-mediated transport (IEA)

intracellular protein transport (IEA)

negative regulation of autophagosome assembly (IEA)

post-Golgi vesicle-mediated transport (ISO)

protein transport (IEA)

regulation of ER to Golgi vesicle-mediated transport (ISO)

regulation of protein transport (IEA)

response to hypoxia (ISO)

response to toxic substance (IEA)

retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum (ISO)

vesicle-mediated transport (IEA)

Cellular Component

cis-Golgi network (IEA)

cytosol (IEA)

Golgi membrane (IEA)

Golgi-associated vesicle (ISO)

Molecular Function

protein binding (ISO)

protein-containing complex binding (ISO)

syntaxin binding (IEA,ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

SCFD1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	31,953,881 - 32,060,885 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	31,170,383 - 31,277,398 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	11,401,378 - 11,508,418 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	29,602,185 - 29,709,133 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	29,602,241 - 29,709,133 (+)	Ensembl	panpan1.1		panPan2

SCFD1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	30,622,254 - 30,735,850 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	30,622,291 - 30,737,694 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	14	31,091,460 - 31,205,056 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	30,161,272 - 30,274,769 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	14	30,161,271 - 30,274,769	NCBI
Celera	14	10,957,301 - 11,070,796 (+)	NCBI		Celera
Cytogenetic Map	14	q12	NCBI
HuRef	14	11,209,016 - 11,322,601 (+)	NCBI		HuRef
CHM1_1	14	31,090,992 - 31,204,539 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	14	24,820,073 - 24,933,666 (+)	NCBI		T2T-CHM13v2.0

Scfd1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	51,424,296 - 51,496,887 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	51,424,293 - 51,496,884 (+)	Ensembl		GRCm39 Ensembl
GRCm38	12	51,377,513 - 51,450,104 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	51,377,510 - 51,450,101 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	12	52,478,567 - 52,551,083 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	12	52,299,200 - 52,371,716 (+)	NCBI		MGSCv36	mm8
Celera	12	52,670,007 - 52,746,143 (+)	NCBI		Celera
Cytogenetic Map	12	B3	NCBI
cM Map	12	22.11	NCBI

Scfd1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	74,531,225 - 74,609,463 (+)	NCBI		GRCr8
mRatBN7.2	6	68,795,810 - 68,874,076 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	68,795,878 - 68,874,078 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	69,231,006 - 69,310,933 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	69,537,662 - 69,617,588 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	68,977,140 - 69,057,067 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	72,124,408 - 72,202,703 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	72,124,417 - 72,202,713 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	81,688,247 - 81,766,841 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	71,453,366 - 71,532,347 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	6	71,456,491 - 71,535,473 (+)	NCBI
Celera	6	67,685,656 - 67,762,975 (+)	NCBI		Celera
Cytogenetic Map	6	q22	NCBI

Scfd1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955409	29,805,909 - 29,903,208 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955409	29,805,909 - 29,903,208 (-)	NCBI	ChiLan1.0	ChiLan1.0

SCFD1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	9,970,724 - 10,077,123 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	9,970,790 - 10,077,122 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	9,897,070 - 10,003,576 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	10,071,833 - 10,178,235 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	10,071,847 - 10,178,223 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	9,750,624 - 9,856,891 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	9,831,913 - 9,938,667 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	10,108,002 - 10,214,379 (+)	NCBI		UU_Cfam_GSD_1.0

Scfd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	41,904,284 - 41,995,811 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936494	5,410,269 - 5,501,498 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936494	5,410,219 - 5,501,687 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SCFD1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	68,712,773 - 68,851,008 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	68,694,579 - 68,851,055 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	73,405,676 - 73,475,796 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Scfd1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624820	1,614,884 - 1,714,020 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003821215	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_003821216	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008974699	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSPPAT00000062668 ⟹ ENSPPAP00000039756

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	14	29,602,241 - 29,709,133 (+)	Ensembl

RefSeq Acc Id:

ENSPPAT00000062674 ⟹ ENSPPAP00000039762

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	14	29,607,786 - 29,708,929 (+)	Ensembl

RefSeq Acc Id:

ENSPPAT00000062676 ⟹ ENSPPAP00000039764

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	14	29,608,121 - 29,614,862 (+)	Ensembl

RefSeq Acc Id:

ENSPPAT00000062681 ⟹ ENSPPAP00000039769

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	14	29,610,433 - 29,614,750 (+)	Ensembl

RefSeq Acc Id:

XM_003821215 ⟹ XP_003821263

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	15	31,953,881 - 32,060,885 (+)	NCBI
NHGRI_mPanPan1	14	31,170,386 - 31,277,398 (+)	NCBI
Mhudiblu_PPA_v0	14	11,401,378 - 11,508,418 (+)	NCBI
PanPan1.1	14	29,602,185 - 29,709,133 (+)	NCBI

Sequence:

show sequence

TTGCTTCCGGGGCGGTAAGGGCAGCCACGTCATCCCCCCGCTCCGCTCCCCAGCCGGGCAGTGG
CTCGTGGGAGCCAAGATGGCGGCGGCGGCGGCAGCGACAGCAGCAGCAGCAGCCAGTATTCGGG
AAAGGCAGACAGTGGCTTTGAAGCGTATGTTGAATTTCAATGTGCCTCATATTAAAAACAGCAC
AGGAGAACCAGTATGGAAGGTACTCATTTATGACAGATTTGGCCAAGATATAATCTCTCCTCTG
CTATCTGTGAAGGAGCTAAGAGACATGGGAATCACTCTGCATCTGCTTTTACACTCTGATCGAG
ATCCTATTCCAGATGTTCCTGCAGTATACTTTGTAATGCCAACTGAAGAAAATATTGACAGAAT
GTGCCAGGATCTTCGAAATCAACTATATGAATCATATTATTTAAATTTTATTTCTGCTATTTCA
AGAAGTAAACTGGAAGATATTGCAAATGCAGCGTTAGCAGCTAGTGCAGTAACACAAGTAGCCA
AGGTTTTTGACCAATATCTCAATTTTATTACTTTGGAAGATGATATGTTTGTATTATGTAATCA
AAATAAGGAGCTTGTTTCATATCGTGCCATTAACAGGCCAGATATCACAGACACGGAAATGGAA
ACTGTTATGGACACTATAGTTGACAGCCTCTTCTGCTTTTTTGTGACTCTGGGTGCTGTTCCTA
TAATCAGATGTTCAAGAGGAACAGCAGCAGAAATGGTAGCAGTGAAACTAGACAAGAAACTTCG
AGAAAATCTAAGAGATGCAAGAAACAGTCTTTTTACAGGTGATACACTTGGAGCTGGCCAATTC
AGCTTCCAGAGGCCCTTATTAGTCCTTGTTGACAGAAACATAGATTTGGCAACTCCTTTACATC
ATACTTGGACATATCAAGCATTGGTGCACGATGTACTGGATTTCCATTTAAACAGGGTTAATTT
GGAAGAATCTTCAGGAGTGGAAAACTCTCCAGCTGGTGCTAGACCAAAGAGAAAAAACAAGAAG
TCTTATGATTTAACTCCGGTTGATAAATTTTGGCAAAAACATAAAGGAAGTCCATTCCCAGAAG
TTGCAGAATCAGTTCAACAAGAACTAGAATCTTACAGAGCACAGGAAGATGAGGTCAAACGACT
TAAAAGCATTATGGGACTAGAAGGGGAAGATGAAGGAGCCATAAGTATGCTTTCTGACAATACC
GCTAAGCTAACATCAGCTGTTAGTTCTTTGCCAGAACTCCTTGAGAAAAAAAGACTTATTGATC
TCCATACAAATGTTGCCACTGCTGTTTTAGAACATATAAAGGCAAGAAAATTGGATGTATATTT
TGAATATGAAGAAAAAATAATGAGCAAAACTACTCTGGATAAATCTCTTCTAGATATAATATCA
GACCCTGATGCAGGAACTCCAGAAGATAAAATGAGGTTGTTTCTTATCTATTATATAAGCACAC
AGCAAGCACCTTCTGAGGCTGATTTGGAGCAATATAAAAAAGCTTTAACTGATGCAGGATGCAA
CCTTAATCCTTTACAATATATCAAACAGTGGAAGGCTTTTACCAAGATGGCCTCAGCTCCGGCC
AGCTATGGCAGCACTACCACTAAACCAATGGGTCTTTTATCACGAGTCATGAATACAGGATCAC
AGTTTGTGATGGAAGGAGTGAAGAACCTGGTTTTGAAACAGCAAAATCTACCTGTTACTCGTAT
TTTGGACAATCTTATGGAGATGAAGTCAAACCCCGAAACTGATGACTATAGATATTTTGATCCC
AAAATGCTGCGGGGCAATGACAGCTCAGTTCCCAGAAATAAAAATCCATTCCAAGAGGCCATTG
TTTTTGTGGTGGGAGGAGGCAACTACATTGAATATCAGAATCTTGTTGACTACATAAAGGGGAA
ACAAGGCAAACACATTTTATATGGCTGCAGTGAGCTTTTTAATGCTACACAGTTCATAAAACAG
TTGTCACAACTTGGACAAAAGTAACACAGAAGAACCTTACTATGATAATCTACTTGGAATGTGG
ATAAATGTAAAAAGAAAGAAGAAAAGTTAGAAGAGCAATATGTTTCCTTCTCTGTAACAGTGTC
CTAACAGTGAAAATCAGAGTTATTTGTTAATTTTTAAGGAAATTATATAGTTAATATGTATTGA
TTAAAAACATTTCAGAAATAAAATGTCAACATTGTT

hide sequence

RefSeq Acc Id:

XM_003821216 ⟹ XP_003821264

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	15	31,953,881 - 32,060,885 (+)	NCBI
NHGRI_mPanPan1	14	31,170,383 - 31,277,398 (+)	NCBI
Mhudiblu_PPA_v0	14	11,401,382 - 11,508,418 (+)	NCBI
PanPan1.1	14	29,602,185 - 29,709,133 (+)	NCBI

Sequence:

show sequence

TTGCTTCCGGGGCGGTAAGGGCAGCCACGTCATCCCCCCGCTCCGCTCCCCAGCCGGGCAGTGG
CTCGTGGGAGCCAAGATGGCGGCGGCGGCGGCAGCGACAGCAGCAGCAGCAGCCAGTATTCGGG
AAAGGCAGACAGGTACTCATTTATGACAGATTTGGCCAAGATATAATCTCTCCTCTGCTATCTG
TGAAGGAGCTAAGAGACATGGGAATCACTCTGCATCTGCTTTTACACTCTGATCGAGATCCTAT
TCCAGATGTTCCTGCAGTATACTTTGTAATGCCAACTGAAGAAAATATTGACAGAATGTGCCAG
GATCTTCGAAATCAACTATATGAATCATATTATTTAAATTTTATTTCTGCTATTTCAAGAAGTA
AACTGGAAGATATTGCAAATGCAGCGTTAGCAGCTAGTGCAGTAACACAAGTAGCCAAGGTTTT
TGACCAATATCTCAATTTTATTACTTTGGAAGATGATATGTTTGTATTATGTAATCAAAATAAG
GAGCTTGTTTCATATCGTGCCATTAACAGGCCAGATATCACAGACACGGAAATGGAAACTGTTA
TGGACACTATAGTTGACAGCCTCTTCTGCTTTTTTGTGACTCTGGGTGCTGTTCCTATAATCAG
ATGTTCAAGAGGAACAGCAGCAGAAATGGTAGCAGTGAAACTAGACAAGAAACTTCGAGAAAAT
CTAAGAGATGCAAGAAACAGTCTTTTTACAGGTGATACACTTGGAGCTGGCCAATTCAGCTTCC
AGAGGCCCTTATTAGTCCTTGTTGACAGAAACATAGATTTGGCAACTCCTTTACATCATACTTG
GACATATCAAGCATTGGTGCACGATGTACTGGATTTCCATTTAAACAGGGTTAATTTGGAAGAA
TCTTCAGGAGTGGAAAACTCTCCAGCTGGTGCTAGACCAAAGAGAAAAAACAAGAAGTCTTATG
ATTTAACTCCGGTTGATAAATTTTGGCAAAAACATAAAGGAAGTCCATTCCCAGAAGTTGCAGA
ATCAGTTCAACAAGAACTAGAATCTTACAGAGCACAGGAAGATGAGGTCAAACGACTTAAAAGC
ATTATGGGACTAGAAGGGGAAGATGAAGGAGCCATAAGTATGCTTTCTGACAATACCGCTAAGC
TAACATCAGCTGTTAGTTCTTTGCCAGAACTCCTTGAGAAAAAAAGACTTATTGATCTCCATAC
AAATGTTGCCACTGCTGTTTTAGAACATATAAAGGCAAGAAAATTGGATGTATATTTTGAATAT
GAAGAAAAAATAATGAGCAAAACTACTCTGGATAAATCTCTTCTAGATATAATATCAGACCCTG
ATGCAGGAACTCCAGAAGATAAAATGAGGTTGTTTCTTATCTATTATATAAGCACACAGCAAGC
ACCTTCTGAGGCTGATTTGGAGCAATATAAAAAAGCTTTAACTGATGCAGGATGCAACCTTAAT
CCTTTACAATATATCAAACAGTGGAAGGCTTTTACCAAGATGGCCTCAGCTCCGGCCAGCTATG
GCAGCACTACCACTAAACCAATGGGTCTTTTATCACGAGTCATGAATACAGGATCACAGTTTGT
GATGGAAGGAGTGAAGAACCTGGTTTTGAAACAGCAAAATCTACCTGTTACTCGTATTTTGGAC
AATCTTATGGAGATGAAGTCAAACCCCGAAACTGATGACTATAGATATTTTGATCCCAAAATGC
TGCGGGGCAATGACAGCTCAGTTCCCAGAAATAAAAATCCATTCCAAGAGGCCATTGTTTTTGT
GGTGGGAGGAGGCAACTACATTGAATATCAGAATCTTGTTGACTACATAAAGGGGAAACAAGGC
AAACACATTTTATATGGCTGCAGTGAGCTTTTTAATGCTACACAGTTCATAAAACAGTTGTCAC
AACTTGGACAAAAGTAACACAGAAGAACCTTACTATGATAATCTACTTGGAATGTGGATAAATG
TAAAAAGAAAGAAGAAAAGTTAGAAGAGCAATATGTTTCCTTCTCTGTAACAGTGTCCTAACAG
TGAAAATCAGAGTTATTTGTTAATTTTTAAGGAAATTATATAGTTAATATGTATTGATTAAAAA
CATTTCAGAAATAAAATGTCAACATTGTT

hide sequence

RefSeq Acc Id:

XM_008974699 ⟹ XP_008972947

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	15	31,953,976 - 32,060,885 (+)	NCBI
NHGRI_mPanPan1	14	31,170,472 - 31,277,398 (+)	NCBI
Mhudiblu_PPA_v0	14	11,401,461 - 11,508,418 (+)	NCBI
PanPan1.1	14	29,602,241 - 29,709,133 (+)	NCBI

Sequence:

show sequence

GGCAGTGGCTCGTGGGAGCCAAGATGGCGGCGGCGGCGGCAGCGACAGCAGCAGCAGCAGCCAG
TATTCGGGAAAGGCAGACAGGTACTGACTTATTCTCTTCTCCTTGAAGCTTCGTGACTGCCCCG
ACGACATCCTTCTCCTCTGTGGCTTTGAAGCGTATGTTGAATTTCAATGTGCCTCATATTAAAA
ACAGCACAGGAGAACCAGTATGGAAGGTACTCATTTATGACAGATTTGGCCAAGATATAATCTC
TCCTCTGCTATCTGTGAAGGAGCTAAGAGACATGGGAATCACTCTGCATCTGCTTTTACACTCT
GATCGAGATCCTATTCCAGATGTTCCTGCAGTATACTTTGTAATGCCAACTGAAGAAAATATTG
ACAGAATGTGCCAGGATCTTCGAAATCAACTATATGAATCATATTATTTAAATTTTATTTCTGC
TATTTCAAGAAGTAAACTGGAAGATATTGCAAATGCAGCGTTAGCAGCTAGTGCAGTAACACAA
GTAGCCAAGGTTTTTGACCAATATCTCAATTTTATTACTTTGGAAGATGATATGTTTGTATTAT
GTAATCAAAATAAGGAGCTTGTTTCATATCGTGCCATTAACAGGCCAGATATCACAGACACGGA
AATGGAAACTGTTATGGACACTATAGTTGACAGCCTCTTCTGCTTTTTTGTGACTCTGGGTGCT
GTTCCTATAATCAGATGTTCAAGAGGAACAGCAGCAGAAATGGTAGCAGTGAAACTAGACAAGA
AACTTCGAGAAAATCTAAGAGATGCAAGAAACAGTCTTTTTACAGGTGATACACTTGGAGCTGG
CCAATTCAGCTTCCAGAGGCCCTTATTAGTCCTTGTTGACAGAAACATAGATTTGGCAACTCCT
TTACATCATACTTGGACATATCAAGCATTGGTGCACGATGTACTGGATTTCCATTTAAACAGGG
TTAATTTGGAAGAATCTTCAGGAGTGGAAAACTCTCCAGCTGGTGCTAGACCAAAGAGAAAAAA
CAAGAAGTCTTATGATTTAACTCCGGTTGATAAATTTTGGCAAAAACATAAAGGAAGTCCATTC
CCAGAAGTTGCAGAATCAGTTCAACAAGAACTAGAATCTTACAGAGCACAGGAAGATGAGGTCA
AACGACTTAAAAGCATTATGGGACTAGAAGGGGAAGATGAAGGAGCCATAAGTATGCTTTCTGA
CAATACCGCTAAGCTAACATCAGCTGTTAGTTCTTTGCCAGAACTCCTTGAGAAAAAAAGACTT
ATTGATCTCCATACAAATGTTGCCACTGCTGTTTTAGAACATATAAAGGCAAGAAAATTGGATG
TATATTTTGAATATGAAGAAAAAATAATGAGCAAAACTACTCTGGATAAATCTCTTCTAGATAT
AATATCAGACCCTGATGCAGGAACTCCAGAAGATAAAATGAGGTTGTTTCTTATCTATTATATA
AGCACACAGCAAGCACCTTCTGAGGCTGATTTGGAGCAATATAAAAAAGCTTTAACTGATGCAG
GATGCAACCTTAATCCTTTACAATATATCAAACAGTGGAAGGCTTTTACCAAGATGGCCTCAGC
TCCGGCCAGCTATGGCAGCACTACCACTAAACCAATGGGTCTTTTATCACGAGTCATGAATACA
GGATCACAGTTTGTGATGGAAGGAGTGAAGAACCTGGTTTTGAAACAGCAAAATCTACCTGTTA
CTCGTATTTTGGACAATCTTATGGAGATGAAGTCAAACCCCGAAACTGATGACTATAGATATTT
TGATCCCAAAATGCTGCGGGGCAATGACAGCTCAGTTCCCAGAAATAAAAATCCATTCCAAGAG
GCCATTGTTTTTGTGGTGGGAGGAGGCAACTACATTGAATATCAGAATCTTGTTGACTACATAA
AGGGGAAACAAGGCAAACACATTTTATATGGCTGCAGTGAGCTTTTTAATGCTACACAGTTCAT
AAAACAGTTGTCACAACTTGGACAAAAGTAACACAGAAGAACCTTACTATGATAATCTACTTGG
AATGTGGATAAATGTAAAAAGAAAGAAGAAAAGTTAGAAGAGCAATATGTTTCCTTCTCTGTAA
CAGTGTCCTAACAGTGAAAATCAGAGTTATTTGTTAATTTTTAAGGAAATTATATAGTTAATAT
GTATTGATTAAAAACATTTCAGAAATAAAATGTCAACATTGTT

hide sequence

Protein Sequences


Protein RefSeqs	XP_003821263	(Get FASTA)	NCBI Sequence Viewer
	XP_003821264	(Get FASTA)	NCBI Sequence Viewer
	XP_008972947	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000039756
	ENSPPAP00000039756.1
	ENSPPAP00000039762
	ENSPPAP00000039762.1
	ENSPPAP00000039764.1
	ENSPPAP00000039769.1

RefSeq Acc Id:	XP_003821263 ⟸ XM_003821215
- Peptide Label:	isoform X1
- UniProtKB:	A0A2R9CNG0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAAAAATAAAAASIRERQTVALKRMLNFNVPHIKNSTGEPVWKVLIYDRFGQDIISPLLSVKE LRDMGITLHLLLHSDRDPIPDVPAVYFVMPTEENIDRMCQDLRNQLYESYYLNFISAISRSKLE DIANAALAASAVTQVAKVFDQYLNFITLEDDMFVLCNQNKELVSYRAINRPDITDTEMETVMDT IVDSLFCFFVTLGAVPIIRCSRGTAAEMVAVKLDKKLRENLRDARNSLFTGDTLGAGQFSFQRP LLVLVDRNIDLATPLHHTWTYQALVHDVLDFHLNRVNLEESSGVENSPAGARPKRKNKKSYDLT PVDKFWQKHKGSPFPEVAESVQQELESYRAQEDEVKRLKSIMGLEGEDEGAISMLSDNTAKLTS AVSSLPELLEKKRLIDLHTNVATAVLEHIKARKLDVYFEYEEKIMSKTTLDKSLLDIISDPDAG TPEDKMRLFLIYYISTQQAPSEADLEQYKKALTDAGCNLNPLQYIKQWKAFTKMASAPASYGST TTKPMGLLSRVMNTGSQFVMEGVKNLVLKQQNLPVTRILDNLMEMKSNPETDDYRYFDPKMLRG NDSSVPRNKNPFQEAIVFVVGGGNYIEYQNLVDYIKGKQGKHILYGCSELFNATQFIKQLSQLG QK hide sequence

RefSeq Acc Id:	XP_003821264 ⟸ XM_003821216
- Peptide Label:	isoform X3
- UniProtKB:	A0A2R9CCU5 (UniProtKB/TrEMBL), A0A2R9CNG0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGITLHLLLHSDRDPIPDVPAVYFVMPTEENIDRMCQDLRNQLYESYYLNFISAISRSKLEDIA NAALAASAVTQVAKVFDQYLNFITLEDDMFVLCNQNKELVSYRAINRPDITDTEMETVMDTIVD SLFCFFVTLGAVPIIRCSRGTAAEMVAVKLDKKLRENLRDARNSLFTGDTLGAGQFSFQRPLLV LVDRNIDLATPLHHTWTYQALVHDVLDFHLNRVNLEESSGVENSPAGARPKRKNKKSYDLTPVD KFWQKHKGSPFPEVAESVQQELESYRAQEDEVKRLKSIMGLEGEDEGAISMLSDNTAKLTSAVS SLPELLEKKRLIDLHTNVATAVLEHIKARKLDVYFEYEEKIMSKTTLDKSLLDIISDPDAGTPE DKMRLFLIYYISTQQAPSEADLEQYKKALTDAGCNLNPLQYIKQWKAFTKMASAPASYGSTTTK PMGLLSRVMNTGSQFVMEGVKNLVLKQQNLPVTRILDNLMEMKSNPETDDYRYFDPKMLRGNDS SVPRNKNPFQEAIVFVVGGGNYIEYQNLVDYIKGKQGKHILYGCSELFNATQFIKQLSQLGQK hide sequence

RefSeq Acc Id:	XP_008972947 ⟸ XM_008974699
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R9CNG0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLNFNVPHIKNSTGEPVWKVLIYDRFGQDIISPLLSVKELRDMGITLHLLLHSDRDPIPDVPAV YFVMPTEENIDRMCQDLRNQLYESYYLNFISAISRSKLEDIANAALAASAVTQVAKVFDQYLNF ITLEDDMFVLCNQNKELVSYRAINRPDITDTEMETVMDTIVDSLFCFFVTLGAVPIIRCSRGTA AEMVAVKLDKKLRENLRDARNSLFTGDTLGAGQFSFQRPLLVLVDRNIDLATPLHHTWTYQALV HDVLDFHLNRVNLEESSGVENSPAGARPKRKNKKSYDLTPVDKFWQKHKGSPFPEVAESVQQEL ESYRAQEDEVKRLKSIMGLEGEDEGAISMLSDNTAKLTSAVSSLPELLEKKRLIDLHTNVATAV LEHIKARKLDVYFEYEEKIMSKTTLDKSLLDIISDPDAGTPEDKMRLFLIYYISTQQAPSEADL EQYKKALTDAGCNLNPLQYIKQWKAFTKMASAPASYGSTTTKPMGLLSRVMNTGSQFVMEGVKN LVLKQQNLPVTRILDNLMEMKSNPETDDYRYFDPKMLRGNDSSVPRNKNPFQEAIVFVVGGGNY IEYQNLVDYIKGKQGKHILYGCSELFNATQFIKQLSQLGQK hide sequence

RefSeq Acc Id:

ENSPPAP00000039764 ⟸ ENSPPAT00000062676

RefSeq Acc Id:

ENSPPAP00000039762 ⟸ ENSPPAT00000062674

RefSeq Acc Id:

ENSPPAP00000039756 ⟸ ENSPPAT00000062668

RefSeq Acc Id:

ENSPPAP00000039769 ⟸ ENSPPAT00000062681

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000042546	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000062668.1	UniProtKB/TrEMBL
	ENSPPAT00000062674.1	UniProtKB/TrEMBL
	ENSPPAT00000062676.1	UniProtKB/TrEMBL
	ENSPPAT00000062681.1	UniProtKB/TrEMBL
Gene3D-CATH	1.25.40.60	UniProtKB/TrEMBL
	3.40.50.1910	UniProtKB/TrEMBL
	3.40.50.2060	UniProtKB/TrEMBL
InterPro	Sec-1-like_dom1	UniProtKB/TrEMBL
	Sec-1-like_dom3a	UniProtKB/TrEMBL
	Sec1-like	UniProtKB/TrEMBL
	Sec1-like_dom2	UniProtKB/TrEMBL
	Sec1-like_sf	UniProtKB/TrEMBL
NCBI Gene	SCFD1	ENTREZGENE
PANTHER	PTHR11679	UniProtKB/TrEMBL
	SEC1 FAMILY DOMAIN-CONTAINING PROTEIN 1	UniProtKB/TrEMBL
Pfam	Sec1	UniProtKB/TrEMBL
PIRSF	VPS45_Sec1	UniProtKB/TrEMBL
Superfamily-SCOP	SSF56815	UniProtKB/TrEMBL
UniProt	A0A2R9CCU5	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R9CD15_PANPA	UniProtKB/TrEMBL
	A0A2R9CD20_PANPA	UniProtKB/TrEMBL
	A0A2R9CNG0	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar